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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HDAEVLDSIMDRLHEPLYEKDTFDPNEVLAENKQLYEEFLLQEISEPKVDNLVRSGDPLAGKAKGTILSLVRNSDLEDII
SSIQQLEEEYNKNFGYPYTFLNDEEFTDEFKDGIKSILPKDRVVEFGTIGPDNWNMPDSIDRERYDQEMDKMSEVESYHN
MCRFYSKEFYHHPLLSKYKYVWRLEPNVNFYCKINYDVFQFMNKNDKIYGFVLNLYDSPQTIETLWTSTMDFVEEHPNYL
NVNGAFAWLKDNSQNPKNYDYTQGYSTCHFWTNFEIVDLDFLRSEPYEKYMQYLEEKGGFYYERWGDAPVRSLALALFAD
KSSIHWFRDIGYHHTPYTNCPTCPADSDRCNGNCVPGKFTPWSDLDNQNCQATWIRHSMSEEELEMY

The query sequence (length=387) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5a07:A 395 394 1.0000 0.9797 0.9822 0.0 5a07:B, 5a08:B
2 7bop:C 372 352 0.3824 0.3978 0.4205 8.46e-101 7bop:A, 7bop:B, 7bop:D, 7bop:E, 7bop:F
3 1s4o:A 335 306 0.3333 0.3851 0.4216 3.73e-85 1s4o:B, 1s4p:A, 1s4p:B
4 2c1d:B 137 42 0.0413 0.1168 0.3810 0.23 2c1d:D, 2c1d:F, 2c1d:H
5 2wpw:A 328 64 0.0465 0.0549 0.2812 0.70 2wpw:B, 2wpw:C, 2wpw:D, 2wpx:A, 2wpx:B
6 1itq:A 369 83 0.0491 0.0515 0.2289 0.93 1itq:B, 1itu:A, 1itu:B
7 5h2u:A 266 194 0.0982 0.1429 0.1959 2.0 6cz3:A, 6cz4:A, 5da3:A, 5h2u:B, 5h2u:C, 5h2u:D
8 8c79:A 478 123 0.0827 0.0669 0.2602 2.4 8c79:B
9 6ky3:A 353 65 0.0517 0.0567 0.3077 8.0
10 7oui:H 60 37 0.0336 0.2167 0.3514 8.7 3jcu:H, 3jcu:h, 5mdx:H, 5mdx:h, 7oui:h
11 2g37:B 300 54 0.0388 0.0500 0.2778 8.9 2ekg:A, 2ekg:B, 2g37:A, 5m42:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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