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BioLiP
>protein
HCRLDKSNFQQPYITNRTFMLAKEASLADQNTDVRLIGEKLFHGVSMSERCYLMKQVLQFTLEEVLFPQSDRFQPYMQEV
VPFLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3dgc:M 141 141 1.0000 1.0000 1.0000 1.89e-104 1ykb:A
2 2ilk:A 155 104 0.1986 0.1806 0.2692 0.45
3 8a22:BF 370 43 0.1348 0.0514 0.4419 1.9 8apn:BF, 8apo:BF
4 8asw:A 1255 60 0.1206 0.0135 0.2833 4.0
5 5e6u:A 583 74 0.1631 0.0395 0.3108 5.7 5e6r:A, 5e6s:A, 5e6s:C, 5e6s:E
6 3h4m:A 261 119 0.1915 0.1034 0.2269 8.0 3h4m:B, 3h4m:C
7 6b9e:B 387 68 0.1631 0.0594 0.3382 8.4 6b9d:A, 6b9d:B, 3q5e:E, 3q5e:G
8 7td5:F 447 44 0.0993 0.0313 0.3182 8.5
9 7cxz:A 245 37 0.0922 0.0531 0.3514 9.2
10 5a8w:D 549 24 0.0709 0.0182 0.4167 9.7 5a8r:A, 5a8r:D, 5a8r:G, 5a8r:J, 5a8w:A, 5a8w:G, 5a8w:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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