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BioLiP
>protein
HCRLCHGKFSVFVRDFQRLLGVAVHQDPALSQFVCRNCHAQFYQCHSLLESFLQRVNVSPM

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ppp:B 61 61 1.0000 1.0000 1.0000 2.94e-40
2 7ppp:A 73 73 1.0000 0.8356 0.8356 4.03e-37
3 2lnw:A 113 14 0.1639 0.0885 0.7143 0.70 7rnv:A, 4roj:A, 4roj:B, 4roj:C, 7wfy:C
4 1qo8:A 564 58 0.2623 0.0284 0.2759 1.4 1qo8:D
5 5jc3:A 668 14 0.1148 0.0105 0.5000 1.4 5jc3:B, 5jc7:B, 5jcf:A, 5jcf:B, 5jch:A, 5jch:B
6 3ogh:B 151 25 0.1639 0.0662 0.4000 1.6 3ogh:A
7 2f6j:A 168 51 0.2459 0.0893 0.2941 2.8 8ag2:A, 6aze:A, 7dmy:A, 7dn4:A, 7dn4:B, 7dn4:C, 7dn4:D, 7dn4:E, 7dn4:F, 7f5c:A, 7f5d:A, 7f5e:A, 2f6j:B, 2f6j:C, 2f6n:A, 2f6n:B, 8f6g:A, 2fsa:A, 2fsa:B, 2fsa:C, 2fuu:A, 5h6y:A, 7k6r:A, 7k6s:A, 7kdw:A, 7kdw:B, 7kdz:A, 7lp0:A, 7lp0:B, 7lpk:A, 7lpk:B, 7lrk:A, 7lrk:B, 7lro:A, 7lro:B, 6lu5:A, 6lu6:A, 7m2e:A, 8ou2:A, 8ou2:B, 3qzs:A, 3qzs:B, 3qzt:A, 3qzv:A, 5r4g:A, 5r4h:A, 5r4i:A, 5r4j:A, 5r4k:A, 5r4l:A, 5r4m:A, 5r4n:A, 2ri7:A, 7rwn:A, 7rwo:A, 7rwp:A, 7rwq:A, 7vd4:A
8 6ee7:A 91 39 0.2459 0.1648 0.3846 4.1 1m1p:A, 1m1p:B, 1m1p:C, 1m1p:D, 1m1p:E, 1m1p:F, 1m1q:A, 1m1r:A
9 4d9n:A 391 42 0.1967 0.0307 0.2857 4.6 4d9m:A, 4d9m:B, 4d9n:B
10 1gth:A 1019 20 0.1475 0.0088 0.4500 4.9 8f5w:A, 8f5w:B, 8f5w:C, 8f5w:D, 8f61:A, 8f61:B, 8f61:C, 8f61:D, 8f6n:A, 8f6n:B, 8f6n:C, 8f6n:D, 1gt8:A, 1gt8:B, 1gt8:C, 1gt8:D, 1gte:A, 1gte:B, 1gte:C, 1gte:D, 1gth:B, 1gth:C, 1gth:D, 1h7w:A, 1h7w:B, 1h7w:C, 1h7w:D, 1h7x:A, 1h7x:B, 1h7x:C, 1h7x:D, 7ljs:A, 7ljs:B, 7ljs:C, 7ljs:D, 7ljt:A, 7ljt:B, 7ljt:C, 7ljt:D, 7lju:A, 7lju:C, 7lju:D, 7lju:B, 7m31:A, 7m31:B, 7m31:C, 7m31:D, 7m32:A, 7m32:B, 7m32:C, 7m32:D
11 6tby:AAA 320 47 0.2459 0.0469 0.3191 6.0 6tc5:AAA
12 5tci:H 406 14 0.1311 0.0197 0.5714 7.2 6dwe:B, 6dwe:H, 6dwe:F, 6dwe:D, 6e9p:B, 6e9p:D, 6e9p:F, 6e9p:H, 5ocw:B, 5ocw:D, 5ocw:F, 5ocw:H, 5ocw:J, 5ocw:L, 5ocw:N, 5ocw:P, 5ocw:R, 5ocw:T, 5ocw:V, 5ocw:X, 5tcg:B, 5tcg:H, 5tcg:F, 5tcg:D, 5tci:B, 5tci:F, 5tci:D, 5tcj:B, 5tcj:H, 5tcj:F, 5tcj:D, 6u6c:B, 6u6c:D, 6u6c:F, 6u6c:H, 6uap:B, 6uap:D, 6uap:F, 6uap:H, 6ub9:B, 6ub9:D, 6ub9:F, 6ub9:H, 6usa:B, 6usa:D, 6usa:F, 6usa:H
13 1sp3:A 436 16 0.1311 0.0183 0.5000 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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