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BioLiP
>protein
HCRLCHGKFSSRSLRSISDGERVFVRDFQRLLGVAVHQDPALSQFVCRNCHAQFYQCHSLLESFLQRVNVSPM

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ppp:A 73 73 1.0000 1.0000 1.0000 2.71e-49
2 7ppp:B 61 73 0.8356 1.0000 0.8356 4.82e-37
3 2lnw:A 113 14 0.1370 0.0885 0.7143 0.96 7rnv:A, 4roj:A, 4roj:B, 4roj:C, 7wfy:C
4 5jc3:A 668 44 0.1781 0.0195 0.2955 2.5 5jc3:B, 5jc7:B, 5jcf:A, 5jcf:B, 5jch:A, 5jch:B
5 3ogh:B 151 25 0.1370 0.0662 0.4000 3.5 3ogh:A
6 6tby:AAA 320 47 0.2055 0.0469 0.3191 7.0 6tc5:AAA
7 4d9n:A 391 42 0.1644 0.0307 0.2857 7.1 4d9m:A, 4d9m:B, 4d9n:B
8 1gth:A 1019 20 0.1233 0.0088 0.4500 7.6 8f5w:A, 8f5w:B, 8f5w:C, 8f5w:D, 8f61:A, 8f61:B, 8f61:C, 8f61:D, 8f6n:A, 8f6n:B, 8f6n:C, 8f6n:D, 1gt8:A, 1gt8:B, 1gt8:C, 1gt8:D, 1gte:A, 1gte:B, 1gte:C, 1gte:D, 1gth:B, 1gth:C, 1gth:D, 1h7w:A, 1h7w:B, 1h7w:C, 1h7w:D, 1h7x:A, 1h7x:B, 1h7x:C, 1h7x:D, 7ljs:A, 7ljs:B, 7ljs:C, 7ljs:D, 7ljt:A, 7ljt:B, 7ljt:C, 7ljt:D, 7lju:A, 7lju:C, 7lju:D, 7lju:B, 7m31:A, 7m31:B, 7m31:C, 7m31:D, 7m32:A, 7m32:B, 7m32:C, 7m32:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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