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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HCDLPCGVFDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVND
TLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKKA

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3g4x:A 117 117 1.0000 1.0000 1.0000 1.67e-85 3g4x:B, 3g4x:C, 3g4z:A, 3g4z:B, 3g4z:C, 3g50:A, 3g50:C, 1t6u:A, 1t6u:B, 1t6u:C, 1t6u:D, 1t6u:E, 1t6u:F, 1t6u:G, 1t6u:H, 1t6u:I, 1t6u:J, 1t6u:K, 1t6u:L
2 1q0d:A 117 117 0.8803 0.8803 0.8803 1.49e-75 1q0d:B, 1q0d:C, 1q0d:D, 1q0d:E, 1q0d:F, 1q0d:G, 1q0d:H, 1q0d:I, 1q0d:J, 1q0d:K, 1q0d:L, 1q0f:A, 1q0f:B, 1q0f:C, 1q0f:D, 1q0f:E, 1q0f:F, 1q0f:G, 1q0f:H, 1q0f:I, 1q0f:J, 1q0f:K, 1q0f:L, 1q0g:A, 1q0g:B, 1q0g:C, 1q0g:D, 1q0g:E, 1q0g:F, 1q0g:G, 1q0g:H, 1q0g:I, 1q0g:J, 1q0g:K, 1q0g:L, 1q0k:A, 1q0k:B, 1q0k:C, 1q0k:D, 1q0k:E, 1q0k:F, 1q0k:G, 1q0k:I, 1q0k:H, 1q0k:J, 1q0k:K, 1q0k:L, 1q0m:A, 1q0m:B, 1q0m:C, 1q0m:D, 1q0m:E, 1q0m:F
3 2dpd:B 117 53 0.1624 0.1624 0.3585 0.25 2dpd:A, 2dpu:A, 2efw:A, 2efw:B, 2efw:F, 2efw:G, 1f4k:A, 1f4k:B
4 7reu:B 358 101 0.1966 0.0642 0.2277 0.78 7reu:A
5 3hsk:A 358 56 0.1624 0.0531 0.3393 0.78
6 6o0e:A 799 90 0.2051 0.0300 0.2667 0.85
7 8d6s:A 818 32 0.1282 0.0183 0.4688 3.1 8d6s:B, 8d6t:B, 8d6t:A, 8d6u:A, 8d6u:B, 6o0e:B, 6o0f:A, 6o0f:B
8 1bpw:A 503 53 0.1453 0.0338 0.3208 3.4 1bpw:B, 1bpw:C, 1bpw:D
9 1kfl:A 350 100 0.2051 0.0686 0.2400 4.1 5cks:A, 5cks:B, 5cks:C, 5cks:D, 8e0s:A, 8e0s:B, 8e0s:C, 8e0s:D, 8e0t:B, 8e0t:C, 8e0v:A, 8e0v:B, 8e0v:C, 8e0v:D, 8e0x:A, 8e0x:B, 8e0x:C, 8e0x:D, 8e0y:C, 1gg1:A, 1gg1:B, 1gg1:C, 1gg1:D, 1kfl:B, 1kfl:C, 1kfl:D, 1kfl:E, 1kfl:F, 1kfl:G, 1kfl:H, 1n8f:A, 1n8f:B, 1n8f:C, 1n8f:D, 1qr7:A, 1qr7:B, 1qr7:C, 1qr7:D, 7rud:B, 7rud:C, 7rud:D, 7rue:A, 7rue:B, 7rue:C, 7rue:D
10 4da2:A 231 28 0.1026 0.0519 0.4286 5.6 4da2:B, 4dav:A, 4dav:B
11 6plm:B 752 58 0.1453 0.0226 0.2931 6.1 6k4r:A, 6k4r:B, 7mir:A, 7mis:A, 6oqq:A, 6oqq:C, 6plm:A, 6s5t:A
12 3obv:D 327 59 0.1197 0.0428 0.2373 6.8 2bap:B, 2bap:A, 2f31:A, 8fg1:A, 3obv:A, 3obv:B, 3obv:C, 4uwx:A, 4uwx:B
13 25c8:H 217 43 0.1197 0.0645 0.3256 8.8 35c8:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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