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BioLiP
>protein
HAHLKSATPAADSTVAAPADLRLTFSAGVEATFTKVSLSKDGTEVAIKGLETPDADKKTLVVTPAAPLAAGNYKVVWNAV
SVDTHKSNGEYSFKVGQ

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bk5:AAA 97 97 1.0000 1.0000 1.0000 3.84e-66 6nfq:A, 6nfq:B, 6nfq:C
2 2c9p:A 102 101 0.4639 0.4412 0.4455 1.82e-18 2c9p:B, 2c9p:C, 2c9q:A
3 5icu:A 102 96 0.3196 0.3039 0.3229 2.73e-09
4 8ytq:D 128 119 0.3608 0.2734 0.2941 4.54e-04 5n1t:W, 8ytq:A, 8ytq:C, 8ytr:A, 8ytr:B
5 7aih:Ah 452 54 0.1649 0.0354 0.2963 3.0 7ane:Ah
6 7olc:SC 216 67 0.2371 0.1065 0.3433 4.5 7old:SC, 8oo0:SC, 7r81:D2, 7z3n:SC, 7z3o:SC
7 6w1n:B 3719 38 0.1546 0.0040 0.3947 5.7 6w1n:D, 6w1n:F, 6w1n:H, 6x34:B, 6x34:D, 6x34:F, 6x34:H
8 6x32:B 3798 38 0.1546 0.0039 0.3947 5.7 6x32:E, 6x32:H, 6x32:K
9 6x35:B 3801 38 0.1546 0.0039 0.3947 5.7 6x35:E, 6x35:H, 6x35:K
10 6x33:B 3816 38 0.1546 0.0039 0.3947 5.7 8drp:A, 8drp:B, 8drp:C, 8drp:D, 6x33:E, 6x33:H, 6x33:K
11 1y0g:A 169 20 0.1134 0.0651 0.5500 7.3 1y0g:B, 1y0g:C, 1y0g:D
12 4v3p:LJ 128 40 0.1340 0.1016 0.3250 8.2 4v7e:CK

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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