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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA
PYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAG
MGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSA
TCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAHQIYPQAINAVGSRDTFVGRIRKDLDAEKGIHMWV
VSDNLLKGAAWNSVQIAETLHERGLVRPTAELKFELKLEHH

The query sequence (length=361) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3pyl:C 361 361 1.0000 1.0000 1.0000 0.0 2gz1:A, 2gz1:B, 2gz2:A, 2gz2:B, 2gz3:A, 2gz3:B, 2gz3:C, 2gz3:D, 3pwk:A, 3pwk:B, 3pws:A, 3pws:B, 3pyl:A, 3pyl:B, 3pyx:A, 3pyx:B, 3pzb:A, 3pzb:B, 3q11:A, 3q11:B, 3q1l:A, 3q1l:B, 3q1l:C, 3q1l:D, 4r3n:A, 4r3n:B, 4r3w:A, 4r3w:B, 4r41:A, 4r41:B, 4r4j:A, 4r4j:B, 4r51:A, 4r51:B, 4r54:A, 4r54:B, 4r5h:A, 4r5h:B
2 2r00:C 336 350 0.4460 0.4792 0.4600 4.65e-96
3 8jus:A 335 343 0.4266 0.4597 0.4490 5.00e-93 8jus:B
4 3tz6:A 342 355 0.3850 0.4064 0.3915 1.96e-71 3vos:A
5 1ys4:A 348 383 0.3269 0.3391 0.3081 1.35e-34 1ys4:B
6 3hsk:A 358 402 0.3019 0.3045 0.2711 2.13e-23
7 3pzr:A 370 357 0.2604 0.2541 0.2633 1.54e-22 1mb4:A, 1mb4:B, 3pzr:B, 3q0e:A, 3q0e:B, 4r5m:A, 4r5m:B
8 6c8w:A 357 399 0.3047 0.3081 0.2757 4.17e-20 6c85:A, 6c85:B, 6c8w:B
9 1gl3:A 367 368 0.2687 0.2643 0.2636 3.73e-19 1gl3:B
10 4zic:C 357 399 0.2798 0.2829 0.2531 6.13e-18 4zic:A
11 5bnt:C 371 373 0.2548 0.2480 0.2466 5.28e-17 5bnt:B, 5bnt:A, 5bnt:D
12 4dpk:A 354 295 0.2188 0.2232 0.2678 5.39e-17 4dpk:B, 4dpk:C, 4dpk:D, 4dpl:A, 4dpl:B, 4dpl:C, 4dpl:D, 4dpm:A, 4dpm:B, 4dpm:C, 4dpm:D, 4dpm:E, 4dpm:F
13 7tcm:A 373 354 0.2355 0.2279 0.2401 2.74e-16 7tcm:B
14 1pqu:A 371 366 0.2604 0.2534 0.2568 3.45e-15 1nx6:A, 1pqp:A, 1pqu:B, 1pqu:C, 1pqu:D, 1pr3:A, 1ta4:A, 1tb4:A
15 8r2j:B 275 86 0.0693 0.0909 0.2907 0.001 8r2j:A
16 2jl1:A 287 78 0.0665 0.0836 0.3077 0.15 2vrb:A
17 6fzi:B 332 95 0.0720 0.0783 0.2737 0.47 6fzi:A, 6fzi:C, 6fzi:D
18 6ghr:B 342 96 0.0637 0.0673 0.2396 0.69 4boy:A, 4boy:B, 6gfo:A, 6gfo:B, 6gfo:C, 6gfo:D, 6gfp:A, 6gfp:B, 6gfq:B, 6gfq:A, 6gfr:A, 6gfr:B, 6gg7:B, 6gg7:A, 6ghl:A, 6ghl:D, 6ghl:B, 6ghl:C, 6ghr:D, 6ghr:A, 6ghr:C, 6gve:D, 6gve:A, 6gve:E, 6gve:F, 6gve:I, 6gve:K, 6gve:N, 6gve:O, 3zcx:A, 3zcx:B, 3zdf:B, 3zdf:A
19 3gnq:C 335 95 0.0693 0.0746 0.2632 0.80 3gnq:B, 3gnq:D, 3gnq:E, 3gnq:F, 3gnq:G, 3gnq:H
20 5l3z:A 280 86 0.0748 0.0964 0.3140 0.86 5l4l:A
21 4y0e:H 308 62 0.0582 0.0682 0.3387 1.3 4y0e:A, 4y0e:B, 4y0e:C, 4y0e:D, 4y0e:E, 4y0e:F, 4y0e:G
22 5yo9:B 366 66 0.0665 0.0656 0.3636 2.0 5yoa:B
23 8efn:A 175 28 0.0388 0.0800 0.5000 2.1 8efn:D
24 1vz0:B 192 103 0.0693 0.1302 0.2427 2.2 1vz0:A, 1vz0:C, 1vz0:D
25 7kz3:D 439 146 0.0914 0.0752 0.2260 2.9 7kz5:A, 7kz5:B, 7kz5:C, 7kz5:D, 7kz6:A, 7kz6:B, 7kz6:C, 7kz6:D, 7kzd:A, 7kzd:B, 7kzd:C, 7kzd:D, 7kzd:E, 7kzd:H, 7kzd:F, 7kzd:G
26 3fpl:A 351 168 0.1136 0.1168 0.2440 3.0
27 6h9s:B 292 49 0.0499 0.0616 0.3673 3.3 6h9s:A
28 2jh3:A 459 84 0.0693 0.0545 0.2976 3.6 2jh3:B, 2jh3:C, 2jh3:D
29 8uxl:A 4232 76 0.0748 0.0064 0.3553 3.7 7u9q:A, 7u9q:D, 7u9q:B, 7u9q:C, 7u9r:A, 7u9r:D, 7u9r:B, 7u9r:C, 7u9t:A, 7u9t:D, 7u9t:B, 7u9t:C, 7u9x:A, 7u9x:B, 7u9x:C, 7u9x:D, 7u9z:A, 7u9z:B, 7u9z:C, 7u9z:D, 7ua1:A, 7ua1:B, 7ua1:C, 7ua1:D, 7ua5:A, 7ua5:B, 7ua5:C, 7ua5:D, 7ua9:A, 7ua9:B, 7ua9:C, 7ua9:D, 8uq2:A, 8uq2:B, 8uq2:C, 8uq2:D, 8uq3:A, 8uq3:B, 8uq3:C, 8uq3:D, 8uq4:A, 8uq4:B, 8uq4:C, 8uq4:D, 8uq5:A, 8uq5:B, 8uq5:C, 8uq5:D, 8uxc:A, 8uxc:B, 8uxc:C, 8uxc:D, 8uxe:A, 8uxe:B, 8uxe:C, 8uxe:D, 8uxf:A, 8uxf:B, 8uxf:C, 8uxf:D, 8uxg:A, 8uxg:B, 8uxg:C, 8uxg:D, 8uxl:B, 8uxl:C, 8uxl:D, 8uxm:A, 8uxm:B, 8uxm:C, 8uxm:D
30 7ua3:A 4443 76 0.0748 0.0061 0.3553 3.9 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
31 4em3:A 437 59 0.0637 0.0526 0.3898 4.1 4em3:B, 4em4:A, 4em4:B, 4emw:A, 4emw:B, 4eqr:A, 4eqr:B, 4eqs:A, 4eqs:B, 4eqw:A, 4eqw:B, 4eqx:A, 4eqx:B, 1yqz:B, 1yqz:A
32 5h56:B 195 129 0.1053 0.1949 0.2946 5.0 5h56:A, 5h5k:A, 5h5k:B, 4s2e:A, 4s2e:B, 4s35:A, 4s35:B, 5xai:B, 5xai:A, 5xb2:B, 5xb2:A, 5xb3:A, 5xb3:B, 5xb5:A
33 5k1s:A 358 120 0.0886 0.0894 0.2667 5.2 5k1s:C, 5k1s:B, 5k1s:D
34 2i3g:A 347 76 0.0693 0.0720 0.3289 5.7 2i3g:B, 7nnq:A, 7nnq:B, 7nnq:C, 7nnq:D, 7nnr:A, 7nnr:B, 7not:A, 7not:B, 7not:C, 7not:D, 7nph:C, 7npj:B
35 3tkn:A 451 45 0.0471 0.0377 0.3778 6.4 3pbp:A, 3pbp:D, 3pbp:G, 3pbp:J, 3tkn:G, 3tkn:D
36 8hrq:B 336 133 0.0886 0.0952 0.2406 6.5 8hro:A, 8hro:B, 8hrp:A, 8hrp:B, 8hrp:C, 8hrp:D, 8hrp:E, 8hrp:F, 8hrp:G, 8hrp:H, 8hrq:A, 8hrr:A, 8hrr:B, 8hrs:A, 8hrs:B, 8hrs:C, 8hrs:D, 8hrt:A, 8hrt:B, 8hrt:C, 8hrt:D
37 3k2b:A 337 96 0.0693 0.0742 0.2604 6.7 3k2b:B, 3k2b:C, 3k2b:D, 3k2b:E, 3k2b:F, 3k2b:G, 3k2b:H, 3k2b:O, 3k2b:Q, 6kez:A, 6kez:B, 6kez:C, 6kez:D, 6kez:E, 6kez:F, 6kez:G, 6kez:H, 3qv1:A, 3qv1:D, 3qv1:B, 3qv1:C, 3qv1:F, 3qv1:E, 3rvd:A, 3rvd:D, 3rvd:B, 3rvd:C, 3rvd:O, 3rvd:Q, 3rvd:F, 3rvd:G, 3rvd:E, 3rvd:H
38 8oha:B 336 97 0.0720 0.0774 0.2680 9.1 8oha:A, 8oha:C, 8oha:D, 8oha:E, 8oha:F, 8oha:G, 8oha:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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