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BioLiP
>protein
GYLTRIGLDGRPRPDLGTLHAIVAAHNRSIPFENLDPLLGIPVADLSAEALFAKLVDRRRGGYCYEHNGLLGYVLEELGF
EVERLSGRVVWMRADDAPLPAQTHNVLSVAVPGADGRYLVDVGFGGQTLTSPIRLEAGPVQQTRHEPYRLTRHGDDHTLA
AQVRGEWQPLYTFTTEPRPRIDLEVGSWYVSTHPGSHFVTGLTVAVVTDDARYNLRGRNLAVHRSGATEHIRFDSAAQVL
DAIVNRFGIDLGDLAGRDVQARVAEVLDT

The query sequence (length=269) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1w6f:A 273 269 1.0000 0.9853 1.0000 0.0 1w6f:B, 1w6f:C, 1w6f:D
2 4b55:A 273 267 0.6171 0.6081 0.6217 6.03e-114 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
3 4nv7:B 270 269 0.4126 0.4111 0.4126 1.26e-60 4nv7:A
4 8k56:B 281 249 0.3197 0.3060 0.3454 4.17e-26 8k56:A
5 2pfr:A 290 246 0.2751 0.2552 0.3008 1.71e-21 2pfr:B
6 8osv:A 248 184 0.2082 0.2258 0.3043 4.08e-17 8oom:A, 8osz:A
7 3lnb:A 252 193 0.2082 0.2222 0.2902 5.51e-17
8 4dmo:A 253 253 0.2342 0.2490 0.2490 5.33e-15 4dmo:B
9 6twi:E 323 64 0.0706 0.0588 0.2969 0.15 4cyw:A, 4cyw:C, 4cyw:E, 4cyz:A, 4cyz:E, 4cz0:A, 4cz0:E, 4cz0:C, 4d00:A, 4d00:C, 4d00:E, 4qy1:E, 4qy1:G, 4qy1:I, 4qy1:U, 4qy2:E, 5tgu:C, 5tgu:E, 5tgu:A, 5tgv:A, 5tgv:C, 5tgv:E, 5th1:A, 5th1:C, 5th1:E, 5thc:E, 5thc:C, 6tva:A, 6tva:C, 6tva:E, 6tvb:A, 6tvb:C, 6tvb:E, 6tvd:A, 6tvd:C, 6tvd:E, 6tvd:G, 6tvd:I, 6tvd:K, 6tvf:A, 6tvf:C, 6tvf:E, 6tvf:G, 6tvf:K, 6tvf:I, 6tvr:K, 6tvs:C, 6tvs:E, 6tvs:K, 6tvt:A, 6tvt:C, 6tvt:E, 6twi:A, 6twi:C, 6twv:C, 6twv:E, 6twv:K, 6twv:G, 6twv:I, 6txo:A, 6txo:C, 6txo:E, 6ty1:A, 6ty1:C, 6ty1:E, 6ty1:G, 6ty1:I, 6ty1:K, 4xqo:A, 4xqo:C, 4xqu:A, 4xqu:C, 4xqu:E
10 6gsz:A 863 200 0.1822 0.0568 0.2450 0.33
11 6gjc:A 2770 59 0.0706 0.0069 0.3220 0.81 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
12 5gkd:A 726 115 0.1190 0.0441 0.2783 0.91 5gkd:B, 5gkd:C, 5gkd:D, 5gkq:A, 5gkq:B
13 6hxj:D 591 37 0.0483 0.0220 0.3514 4.4 6hxj:B, 6hxj:F, 6hxj:H, 6hxn:A, 6hxn:B, 6hxo:A, 6hxo:B, 6hxo:F, 6hxo:G, 6hxo:H, 6nzy:A, 6nzy:D, 6qcl:B, 6qcl:E, 6qcl:F, 6qcl:G, 6qcl:H
14 1gv0:A 301 33 0.0520 0.0465 0.4242 4.7 1gv0:B
15 4day:A 144 48 0.0446 0.0833 0.2500 8.0
16 6lum:A 539 22 0.0483 0.0241 0.5909 9.1 6lum:J, 6lum:P
17 5ein:A 344 46 0.0595 0.0465 0.3478 10.0 5ein:B, 5eio:A, 5eio:B, 2ozp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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