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BioLiP
>protein
GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7b3j:A 55 34 1.0000 0.6182 1.0000 2.53e-18 7b3k:A, 8kf1:F, 8kf1:B, 8kf1:J, 8kf1:H, 8kf1:C, 2m9r:A, 2m9s:A, 6oc9:B, 6oc9:C, 6oc9:D, 6oc9:E, 6oc9:G, 6oc9:H, 6oc9:I, 6oc9:J
2 6o3v:B 831 17 0.2647 0.0108 0.5294 4.8 6o3v:A, 6o3v:C, 6o6b:A, 6o6b:B, 6o6b:C, 6o6b:D
3 3gwj:D 674 18 0.2353 0.0119 0.4444 5.9 3gwj:A, 3gwj:F, 3gwj:B, 3gwj:E, 3gwj:C
4 7t3u:C 1575 22 0.2647 0.0057 0.4091 7.4
5 7t3u:A 2020 22 0.2647 0.0045 0.4091 7.4 7t3u:D
6 8tl9:D 2034 22 0.2647 0.0044 0.4091 7.4 8tla:D
7 6uqk:A 2054 22 0.2647 0.0044 0.4091 7.4 6uqk:B, 6uqk:C, 6uqk:D
8 7t3p:A 2066 22 0.2647 0.0044 0.4091 7.4 7t3p:B, 7t3p:C, 7t3p:D
9 7t3q:A 2103 22 0.2647 0.0043 0.4091 7.4 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
10 7t3r:A 2130 22 0.2647 0.0042 0.4091 7.4 7t3r:B, 7t3r:C, 7t3r:D, 7t3t:A, 7t3t:B, 7t3t:C, 7t3t:D
11 6dr0:C 2193 22 0.2647 0.0041 0.4091 7.4 6dqj:A, 6dqj:B, 6dqj:C, 6dqj:D, 6dqn:A, 6dqn:B, 6dqn:C, 6dqn:D, 6dqs:A, 6dqs:B, 6dqs:C, 6dqs:D, 6dqv:A, 6dqv:B, 6dqv:C, 6dqv:D, 6dqz:A, 6dqz:B, 6dqz:D, 6dqz:C, 6dr0:A, 6dr0:B, 6dr0:D, 6dr2:A, 6dr2:B, 6dr2:C, 6dr2:D, 6dra:A, 6dra:B, 6dra:C, 6dra:D, 6drc:A, 6drc:B, 6drc:C, 6drc:D
12 8tkd:A 2249 22 0.2647 0.0040 0.4091 7.4 8tkd:B, 8tkd:C, 8tkd:D, 8tke:A, 8tke:B, 8tke:C, 8tke:D, 8tkg:A, 8tkg:B, 8tkg:C, 8tkg:D, 8tl9:A, 8tl9:B, 8tla:A, 8tla:B
13 8tk8:A 2268 22 0.2647 0.0040 0.4091 7.4 8tk8:B, 8tk8:C, 8tk8:D, 8tkh:A, 8tkh:B, 8tkh:C, 8tkh:D, 8tki:A, 8tki:B, 8tki:C, 8tki:D, 8tl9:C, 8tla:C
14 8tkf:A 2272 22 0.2647 0.0040 0.4091 7.4 8tkf:D, 8tkf:B, 8tkf:C
15 4yzw:B 682 13 0.2059 0.0103 0.5385 7.6 4yzw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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