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BioLiP
>protein
GYDKDLCEWSMTADQTEVETQIEADIMNIVKRDRPEMKAEVQKQLKSGGVMQYNYVLYCDKNFNNKNIIAEVVGE

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7cn6:B 75 75 1.0000 1.0000 1.0000 6.11e-52 7cn6:C
2 4c3h:A 1523 22 0.1600 0.0079 0.5455 2.9 4c2m:A, 4c2m:P, 4c3j:A
3 1k1x:A 636 65 0.2000 0.0236 0.2308 4.3 1k1w:A, 1k1x:B, 1k1y:A, 1k1y:B
4 4nqr:A 364 60 0.2667 0.0549 0.3333 6.6 4nqr:B, 4nv3:A, 4nv3:B, 4oat:A, 4oat:B, 4obb:A, 4obb:B, 4og2:A, 4og2:B, 4otz:A, 4otz:B, 4qym:A, 4qym:B, 4rdc:A, 4rv5:A, 4rv5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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