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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GWTDPTEFPLGCSPNVTTPKNGLSMELYSYDYLKSGSNPCWDAAYLDPNYPRTGYKSHRLLAKVENVAGNINFYYHAPMG
CTSLFDTLPQAYNYRTPLTMTNFTMLLYGYFKPKVTGYHTFTISADDLLFVNFGAGNAFDCCKRESSADDFGNYQAYAVW
GSQTAKDDLTVHLDAGLYYPIRIFFNNRDNDGALSLTLKTESDPNPVIDFSDYFYSFDDTKDGCPGLVSYDT

The query sequence (length=232) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4coy:A 232 232 1.0000 1.0000 1.0000 2.26e-174 4cou:A, 4cov:A, 4cow:A, 4coz:A
2 6y9j:A 231 227 0.7759 0.7792 0.7930 1.31e-136 4a3x:A, 4af9:A, 4afa:A, 4afb:A, 4afc:A, 4asl:A, 4d3w:A
3 6y98:A 225 219 0.4138 0.4267 0.4384 4.01e-55 4cp0:A, 4cp1:A, 4cp2:A
4 4gq7:A 220 223 0.2802 0.2955 0.2915 2.55e-13 4lhk:A, 4lhk:B
5 2xjp:A 258 130 0.1853 0.1667 0.3308 9.98e-13 4lhn:A, 2xjr:A, 2xjs:A, 2xjt:A, 2xju:A, 2xjv:A
6 6hos:A 213 179 0.2155 0.2347 0.2793 9.44e-12 6hos:B
7 5a3l:A 209 179 0.2241 0.2488 0.2905 6.78e-09 5a3l:B, 5a3l:C, 5a3l:D, 5a3m:A, 5a3m:B, 5a3m:C, 5a3m:D
8 4fln:B 464 43 0.0647 0.0323 0.3488 0.20 4fln:A, 4fln:C
9 4hcx:A 402 28 0.0474 0.0274 0.3929 1.2 4hcx:B
10 3bs1:A 103 42 0.0733 0.1650 0.4048 1.5 4xqj:A, 4xqj:D, 4xqn:A, 4xqn:J, 4xqn:D, 4xqn:G, 4xqq:B, 4xxe:A, 4xxe:D, 4xyq:A
11 3pmo:A 357 93 0.1250 0.0812 0.3118 6.1 6uec:A
12 6sxu:AAA 500 71 0.0905 0.0420 0.2958 7.8 1pz2:A, 1pz2:B, 1qw8:A, 1qw8:B, 1qw9:A, 1qw9:B, 6sxu:BBB, 6sxv:A, 6sxv:B
13 8ep4:A 265 69 0.0776 0.0679 0.2609 8.0 8ep4:B, 8ep4:C, 8ew1:A, 8ew1:B, 8ew1:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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