Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GVWTNVEDQILKAAVQKYGTHQWSKVASLLQKKTARQSELRWNEYLNPKLNFTEFSKEEDAQLLDLARELPNQWRTIADM
MARPAQVCVERYNRLLEEEKEMLAEARARLLNTQGKKATRKIRERMLEESKRIAELQKRRELKQAGINVAIKKPKKKYGT
DIDYNEDIVYEQAPMPGIYDTSTEDRQIKKKFEQFERKVNRKGAAAAAAAAAAAAAAAAAAAAAAAARMQHITQGRTSMK
IQFKTAMPPTEVLLESIQSKVESIEQLQRKLQHVQPLEQQ

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b9v:O 280 280 1.0000 1.0000 1.0000 0.0
2 5gmk:c 436 233 0.8071 0.5183 0.9700 2.19e-164 5lj3:O, 5mps:O, 5mq0:O, 5wsg:c
3 5gmk:c 436 78 0.2679 0.1720 0.9615 1.41e-38 5lj3:O, 5mps:O, 5mq0:O, 5wsg:c
4 6exn:O 320 304 0.8357 0.7312 0.7697 3.24e-159 6bk8:S
5 5lj5:O 283 280 0.8143 0.8057 0.8143 9.38e-158
6 5gm6:c 415 227 0.7429 0.5012 0.9163 1.98e-149
7 5gm6:c 415 78 0.2679 0.1807 0.9615 1.62e-38
8 6j6g:c 436 209 0.7250 0.4656 0.9713 8.50e-147 6j6h:c, 6j6n:c, 6j6q:c, 5y88:J, 5ylz:J
9 6j6g:c 436 54 0.1893 0.1216 0.9815 3.85e-28 6j6h:c, 6j6n:c, 6j6q:c, 5y88:J, 5ylz:J
10 7dco:L 435 203 0.6607 0.4253 0.9113 6.71e-132
11 7dco:L 435 54 0.1893 0.1218 0.9815 4.25e-28
12 5mqf:L 336 196 0.3821 0.3185 0.5459 7.88e-58
13 6qdv:O 441 208 0.3857 0.2449 0.5192 2.51e-56 7w59:L, 7w5a:L, 7w5b:L
14 8i0w:L 419 207 0.3857 0.2578 0.5217 3.73e-56 5yzg:L
15 8i0u:L 387 206 0.3821 0.2765 0.5194 4.65e-56 8i0v:L
16 6icz:L 454 207 0.3857 0.2379 0.5217 8.50e-56 5xjc:L
17 9fmd:L 555 208 0.3857 0.1946 0.5192 3.64e-55 8c6j:O, 7dvq:L, 6ff4:L, 8i0p:L, 8i0r:L, 6zym:L
18 6id0:L 475 228 0.3857 0.2274 0.4737 2.28e-52 6id1:L
19 8ro2:L 555 228 0.3857 0.1946 0.4737 7.39e-52 7abi:L
20 3jb9:W 426 187 0.3286 0.2160 0.4920 3.40e-51
21 8ro1:L 623 235 0.3536 0.1589 0.4213 7.57e-51 8ro0:L
22 8i0s:L 169 186 0.3250 0.5385 0.4892 2.27e-49
23 8ch6:P 330 185 0.2929 0.2485 0.4432 4.74e-44 8i0t:L, 7qtt:P
24 5z56:L 342 187 0.2429 0.1988 0.3636 5.43e-32 5z57:L, 5z58:L
25 1h88:C 152 122 0.1464 0.2697 0.3361 1.20e-12 1h89:C, 1h8a:C, 1mse:C, 1msf:C
26 1h88:C 152 81 0.1071 0.1974 0.3704 6.92e-12 1h89:C, 1h8a:C, 1mse:C, 1msf:C
27 3osg:A 110 90 0.1107 0.2818 0.3444 2.67e-10 3osf:A, 3osf:D, 3osg:D
28 6kks:A 106 79 0.0929 0.2453 0.3291 5.05e-09
29 2kdz:A 107 78 0.0929 0.2430 0.3333 1.29e-07
30 3zqc:J 119 117 0.1000 0.2353 0.2393 9.99e-07 3zqc:A, 3zqc:D, 3zqc:G
31 5eyb:A 340 130 0.1321 0.1088 0.2846 0.026 5eyb:B
32 8ity:4 365 100 0.0964 0.0740 0.2700 0.45 8iue:4, 8iuh:4
33 8ity:4 365 102 0.0929 0.0712 0.2549 8.1 8iue:4, 8iuh:4
34 7zwc:c 303 100 0.0964 0.0891 0.2700 0.63 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
35 7zwc:c 303 102 0.0929 0.0858 0.2549 9.5 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
36 1vfc:A 63 25 0.0393 0.1746 0.4400 2.1 3sjm:A, 3sjm:B, 1w0u:A, 1w0u:B
37 6b98:B 349 94 0.0964 0.0774 0.2872 2.8 6b96:A, 6b96:B, 6b97:A, 6b97:B, 6b98:A, 6blf:A, 6blf:B, 6cyb:A, 6cyb:B, 6cyc:A, 6cyc:B, 6cyd:A, 6cyd:B
38 3ibj:B 643 103 0.1036 0.0451 0.2816 3.0
39 1e03:L 423 46 0.0500 0.0331 0.3043 3.8 1azx:I, 1azx:L, 2b5t:I, 1br8:I, 1e03:I, 3evj:I, 3evj:L, 2gd4:I, 2gd4:C, 1jvq:I, 3kcg:I, 1lk6:I, 1nq9:I, 1nq9:L, 1r1l:I, 1sr5:A, 1tb6:I
40 3ibj:A 661 94 0.0964 0.0408 0.2872 3.9 4c1i:A, 4c1i:B, 4c1i:C, 4c1i:D, 6c7d:A, 6c7d:B, 6c7d:C, 6c7d:D, 6c7e:A, 6c7e:B, 6c7e:C, 6c7e:D, 6c7f:A, 6c7f:B, 6c7f:C, 6c7g:A, 6c7g:B, 6c7g:C, 6c7g:D, 6c7i:A, 6c7i:B, 6c7i:C, 6c7i:D, 6c7j:A, 6c7j:B, 6c7j:C, 6c7j:D, 4d08:A, 4d08:B, 4d08:C, 4d08:D, 4d09:A, 4d09:B, 4d09:C, 4d09:D, 6ezf:A, 4htx:A, 4htx:B, 4htx:C, 4htx:D, 4htz:A, 4htz:B, 4htz:C, 4htz:D, 3itm:A, 3itm:B, 3itm:C, 3itm:D, 3itu:A, 3itu:B, 3itu:C, 3itu:D, 4jib:A, 4jib:B, 4jib:C, 4jib:D, 1mc0:A, 5tz3:A, 5tz3:B, 5tz3:C, 5tz3:D, 5tza:A, 5tza:B, 5tza:C, 5tza:D, 5tzc:A, 5tzc:B, 5tzc:C, 5tzc:D, 5tzh:A, 5tzh:B, 5tzh:C, 5tzh:D, 5tzw:A, 5tzw:B, 5tzw:C, 5tzw:D, 5tzx:A, 5tzx:B, 5tzx:C, 5tzx:D, 5tzz:A, 5tzz:B, 5tzz:C, 5tzz:D, 5u00:A, 5u00:B, 5u00:C, 5u00:D, 5u7d:A, 5u7d:B, 5u7d:C, 5u7i:A, 5u7i:B, 5u7i:C, 5u7i:D, 5u7j:A, 5u7j:B, 5u7j:C, 5u7j:D, 5u7k:A, 5u7k:B, 5u7k:C, 5u7k:D, 5u7l:A, 5u7l:B, 5u7l:C, 5vp0:A, 5vp0:B, 5vp0:C, 5vp1:A, 5vp1:B, 5vp1:C, 5xkm:A, 5xkm:B, 5xkm:C, 5xkm:D, 5xkm:E, 5xkm:F, 1z1l:A, 6znd:A, 6znd:B, 6zqz:A, 6zqz:B, 6zqz:C, 6zqz:D
41 6fn0:A 496 92 0.0964 0.0544 0.2935 7.1 6fn2:A, 6fn3:A, 5zm0:A
42 8ox1:M 65 24 0.0393 0.1692 0.4583 8.1 1iv6:A, 8ox1:L, 1w0t:A, 1w0t:B
43 3n58:B 461 78 0.0750 0.0456 0.2692 9.3 3n58:A, 3n58:C, 3n58:D
44 7xur:A 307 102 0.0929 0.0847 0.2549 10.0

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218