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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPI
IGRTAAQCLEHYEFLLDKAAKAREKQLEEARRLAALQKRREKRKRGVDYNAEIPFEKKPALGFYDTSEADVDARKQAIRD
AERVKEMKRMHLQKSEELIKKEMITMLHYDLLHHKEELKKAQDVLVQEMEVVKQGMSHGESLEKRLEINRGHMTTEAKRA
AKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLKEDVQRQQEREKELQHRYAD
LLLEKETLKS

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ch6:P 330 330 1.0000 1.0000 1.0000 0.0 8i0t:L, 7qtt:P
2 8i0u:L 387 387 0.9879 0.8424 0.8424 0.0 8i0v:L
3 6qdv:O 441 437 0.9788 0.7324 0.7391 0.0 7w59:L, 7w5a:L, 7w5b:L
4 8i0w:L 419 416 0.8667 0.6826 0.6875 0.0 5yzg:L
5 5z56:L 342 364 0.8000 0.7719 0.7253 5.58e-175 5z57:L, 5z58:L
6 6icz:L 454 451 0.8606 0.6256 0.6297 4.54e-173 5xjc:L
7 5mqf:L 336 371 0.7788 0.7649 0.6927 1.69e-162
8 6id0:L 475 472 0.8303 0.5768 0.5805 6.11e-160 6id1:L
9 8ro2:L 555 559 0.8303 0.4937 0.4902 8.46e-132 7abi:L
10 8i0s:L 169 168 0.4485 0.8757 0.8810 1.37e-100
11 9fmd:L 555 282 0.5455 0.3243 0.6383 2.45e-99 8c6j:O, 7dvq:L, 6ff4:L, 8i0p:L, 8i0r:L, 6zym:L
12 9fmd:L 555 292 0.4970 0.2955 0.5616 1.16e-90 8c6j:O, 7dvq:L, 6ff4:L, 8i0p:L, 8i0r:L, 6zym:L
13 3jb9:W 426 173 0.3394 0.2629 0.6474 4.82e-67
14 3jb9:W 426 79 0.0667 0.0516 0.2785 1.8
15 8ro1:L 623 213 0.3424 0.1814 0.5305 3.53e-62 8ro0:L
16 8ro1:L 623 184 0.1818 0.0963 0.3261 2.20e-17 8ro0:L
17 7dco:L 435 170 0.2485 0.1885 0.4824 3.91e-45
18 5gm6:c 415 175 0.2455 0.1952 0.4629 5.33e-45
19 7b9v:O 280 190 0.2455 0.2893 0.4263 2.15e-44
20 5lj5:O 283 190 0.2485 0.2898 0.4316 7.08e-43
21 6j6g:c 436 191 0.2424 0.1835 0.4188 1.08e-41 6j6h:c, 6j6n:c, 6j6q:c, 5y88:J, 5ylz:J
22 5gmk:c 436 196 0.2455 0.1858 0.4133 1.52e-41 5lj3:O, 5mps:O, 5mq0:O, 5wsg:c
23 6exn:O 320 209 0.2485 0.2562 0.3923 3.64e-40 6bk8:S
24 3zqc:J 119 85 0.0939 0.2605 0.3647 8.61e-13 3zqc:A, 3zqc:D, 3zqc:G
25 6kks:A 106 100 0.1030 0.3208 0.3400 2.21e-12
26 1h88:C 152 97 0.1030 0.2237 0.3505 7.01e-12 1h89:C, 1h8a:C, 1mse:C, 1msf:C
27 1h88:C 152 119 0.1212 0.2632 0.3361 1.12e-11 1h89:C, 1h8a:C, 1mse:C, 1msf:C
28 1h88:C 152 75 0.0788 0.1711 0.3467 0.23 1h89:C, 1h8a:C, 1mse:C, 1msf:C
29 3osg:A 110 79 0.0970 0.2909 0.4051 2.08e-10 3osf:A, 3osf:D, 3osg:D
30 2kdz:A 107 54 0.0606 0.1869 0.3704 6.37e-08
31 7zwc:c 303 99 0.1121 0.1221 0.3737 6.90e-06 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
32 7zwc:c 303 104 0.0879 0.0957 0.2788 0.18 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
33 5eyb:A 340 104 0.1061 0.1029 0.3365 1.40e-05 5eyb:B
34 8ity:4 365 99 0.1121 0.1014 0.3737 2.23e-05 8iue:4, 8iuh:4
35 8ity:4 365 95 0.1000 0.0904 0.3474 2.69e-05 8iue:4, 8iuh:4
36 8ity:4 365 100 0.1000 0.0904 0.3300 5.21e-05 8iue:4, 8iuh:4
37 8ity:4 365 106 0.0909 0.0822 0.2830 0.20 8iue:4, 8iuh:4
38 7xur:A 307 129 0.1333 0.1433 0.3411 2.67e-05
39 7xur:A 307 95 0.1000 0.1075 0.3474 5.79e-05
40 7xur:A 307 100 0.1000 0.1075 0.3300 1.04e-04
41 7xur:A 307 106 0.0909 0.0977 0.2830 0.36
42 4a69:C 69 43 0.0424 0.2029 0.3256 0.65 4a69:D
43 8ox1:M 65 45 0.0545 0.2769 0.4000 0.80 1iv6:A, 8ox1:L, 1w0t:A, 1w0t:B
44 6e9f:A 864 76 0.0818 0.0312 0.3553 0.82 6e9e:A
45 7c4p:A 55 43 0.0485 0.2909 0.3721 0.91 7c4p:B, 7c4q:A, 7c4q:B, 7c4r:A, 7c4r:B
46 8asw:A 1255 188 0.1394 0.0367 0.2447 3.8
47 5b2r:B 1319 50 0.0485 0.0121 0.3200 4.0 5b2s:B, 5fq5:B, 5fw1:B, 8g1i:A, 6k3z:B, 6k4s:B, 6k4u:B, 6k57:B, 7qqw:B, 4un3:B, 4un4:B, 4un5:B, 8wus:A, 8wut:A, 8wuu:A
48 8t7s:A 1312 50 0.0485 0.0122 0.3200 4.0
49 8t6x:A 1278 50 0.0485 0.0125 0.3200 4.2
50 7s4v:A 1122 50 0.0485 0.0143 0.3200 4.5 6o0x:A, 8t6p:A
51 9ax8:z 509 47 0.0455 0.0295 0.3191 4.6 3jcj:f, 3jcn:b, 5me0:W, 5me1:W, 6o7k:f, 6o9k:z
52 6o0y:A 1146 50 0.0485 0.0140 0.3200 4.8
53 8t6t:A 1168 50 0.0485 0.0137 0.3200 4.8 8t7s:G
54 6k8n:A 668 62 0.0545 0.0269 0.2903 6.7 6k8n:B, 6k8n:C, 6k8n:D, 6k8o:A
55 1vfc:A 63 42 0.0455 0.2381 0.3571 8.2 3sjm:A, 3sjm:B, 1w0u:A, 1w0u:B
56 6ecv:A 286 62 0.0515 0.0594 0.2742 9.5 6ecu:A, 6ecu:B, 6ecv:B, 6ecw:A, 6ecw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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