Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GVVLVGKAWEIRAKLKEYGRTFQYVKDWIS

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4u39:L 30 30 1.0000 1.0000 1.0000 4.71e-16
2 7e78:A 562 23 0.2667 0.0142 0.3478 1.1 7e78:C
3 1rqx:C 338 25 0.4000 0.0355 0.4800 1.2 1rqx:A, 1rqx:B, 1rqx:D, 1tyz:A, 1tyz:B, 1tyz:C, 1tyz:D, 1tz2:A, 1tz2:B, 1tz2:C, 1tz2:D, 1tzj:A, 1tzj:B, 1tzj:C, 1tzj:D, 1tzk:A, 1tzk:B, 1tzk:C, 1tzk:D, 1tzm:A, 1tzm:B, 1tzm:C, 1tzm:D
4 7olc:Ls 189 33 0.4667 0.0741 0.4242 5.0 7old:Ls, 8oo0:Ls, 7z3n:Ls, 7z3o:Ls
5 4hdq:A 311 15 0.2333 0.0225 0.4667 5.7 6oq3:A, 6oq4:A, 8su8:A, 8t09:A, 8t7v:A, 3u7d:A, 3u7d:C, 6uzk:A
6 4e7b:A 419 20 0.3000 0.0215 0.4500 5.7 1a2n:A, 4e7b:B, 4e7b:C, 4e7b:D, 4e7c:A, 4e7c:B, 4e7d:A, 4e7e:A, 4e7e:D, 4e7f:A, 1eyn:A, 3iss:A, 3iss:B, 3iss:C, 3iss:D, 3iss:E, 3iss:F, 3iss:G, 3iss:H, 3iss:I, 3iss:J, 3iss:K, 3iss:L, 3kqa:A, 3kqa:B, 3kqa:C, 3kqa:D, 3kqj:A, 3kr6:A, 3lth:A, 1q3g:A, 1q3g:B, 1q3g:C, 1q3g:D, 1q3g:E, 1q3g:F, 1q3g:G, 1q3g:H, 1q3g:I, 1q3g:J, 1q3g:K, 1q3g:L, 1q3g:W, 1q3g:X, 1q3g:Y, 1q3g:Z, 1ryw:A, 1ryw:B, 1ryw:C, 1ryw:D, 1ryw:E, 1ryw:F, 1ryw:G, 1ryw:H, 3su9:A, 3swa:A, 3swa:B, 3swd:A, 3swd:B, 3swd:C, 3swd:D, 3swd:E, 3swd:F, 3swd:G, 3swd:H, 3swd:I, 3swd:J, 3swd:K, 3swd:L, 3swi:A, 3swq:A, 1uae:A, 3upk:A, 3v4t:A, 3v4t:B, 3v4t:C, 3v4t:D, 3v4t:E, 3v4t:F, 3v4t:G, 3v4t:H, 1ybg:A, 1ybg:B, 1ybg:C, 1ybg:D, 2z2c:A, 2z2c:B, 2z2c:C, 2z2c:D
7 3vcy:A 419 20 0.3333 0.0239 0.5000 5.9 3vcy:B, 3vcy:C, 3vcy:D
8 6c6r:A 451 30 0.4000 0.0266 0.4000 6.8 6c6n:A, 6c6n:B, 6c6p:A, 6c6p:B, 6c6r:B
9 6rtp:B 484 28 0.4000 0.0248 0.4286 6.9 5jsh:B, 5jsk:B, 5jsu:B, 5jsy:B, 5jt1:B, 6ru9:B, 6ruc:B, 2wpn:B, 6z7r:B, 6z7r:D, 6z8j:B, 6z8j:D, 6z8m:B, 6z8o:B, 6z8o:D, 6z9g:B, 6z9g:D, 6z9g:F, 6z9g:H, 6z9o:B, 6za1:B, 3ze6:B, 3ze7:B, 3ze8:B, 3ze9:B, 3zea:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218