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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GVTVTSHREYLTQVNNSSGFVVNGGIVGNSLQLNPSNGTLFSWLPALASNFDQYSFNSVVLDYVPLCGTTEVGRVALYFD
KDSQDPEPADRVELANFGVLKETAPWAEAMLRIPTDKVKRYCNDSATVDQKLIDLGQLGIATYGGAGADAVGELFLARSV
TLYFPQPTNTLLSSKRLDLTGSLADATGPGYLVLTRTPTVLTHTFRATGTFNLSGGLRCLTSLTLGATGAVVINDILAID
NVGTASDYFLNCTVSSLPATVTFTVSGVAAGILLVGRARANVVNLL

The query sequence (length=286) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2tbv:C 321 286 1.0000 0.8910 1.0000 0.0 2tbv:A, 2tbv:B
2 6mrl:D 326 190 0.3042 0.2669 0.4579 2.89e-53 6mrl:A, 6mrl:B
3 4llf:D 321 253 0.3601 0.3209 0.4071 9.78e-52 4llf:A, 4llf:B, 4llf:E, 4llf:G, 4llf:F, 4llf:H, 4llf:J, 4llf:I, 4llf:K, 4llf:M, 4llf:L, 4llf:N, 4llf:P, 4llf:O
4 2zah:C 331 162 0.2448 0.2115 0.4321 1.96e-43 2zah:A, 2zah:B
5 6mrm:C 315 187 0.2413 0.2190 0.3690 3.32e-35 6mrm:A, 6mrm:B
6 1opo:C 268 189 0.2133 0.2276 0.3228 7.38e-22 1opo:B
7 1x33:C 225 143 0.1224 0.1556 0.2448 9.60e-08 1smv:A, 1smv:B, 1smv:C, 1vak:A, 1vb4:A, 2vq0:A, 2vq0:C, 2vq0:B, 1x33:A, 1x33:B, 1x35:A, 1x35:B, 1x35:C, 1x36:A
8 4sbv:C 222 96 0.0944 0.1216 0.2812 8.19e-05 4sbv:A, 4sbv:B
9 1c8n:C 219 67 0.0769 0.1005 0.3284 8.72e-05 1c8n:A, 1c8n:B
10 7eap:A 755 56 0.0839 0.0318 0.4286 1.2 5yot:A, 5yot:B, 5yqs:A, 5yqs:B
11 1amk:A 250 81 0.0909 0.1040 0.3210 2.3 7abx:A, 7az3:A, 7az4:A, 7az9:A, 7aza:A, 1if2:A, 1n55:A, 1qds:A, 2vxn:A, 2y61:A, 2y62:A, 2y63:A
12 1xvx:A 311 54 0.0664 0.0611 0.3519 3.0
13 1fr6:A 361 47 0.0559 0.0443 0.3404 4.8 1fr6:B, 8jb8:A, 8jb8:B, 1rgy:A
14 4v99:GW 217 79 0.0664 0.0876 0.2405 6.4 4v99:AA, 4v99:EV, 4v99:AF, 4v99:A5, 4v99:AK, 4v99:Da, 4v99:AP, 4v99:Ba, 4v99:AU, 4v99:Ca, 4v99:AZ, 4v99:Dz, 4v99:Ae, 4v99:Bk, 4v99:Aj, 4v99:Ez, 4v99:Ao, 4v99:DL, 4v99:AG, 4v99:At, 4v99:Ay, 4v99:EL, 4v99:A4, 4v99:BQ, 4v99:BA, 4v99:Bu, 4v99:Au, 4v99:BF, 4v99:BK, 4v99:Ck, 4v99:BG, 4v99:BP, 4v99:AV, 4v99:BU, 4v99:BZ, 4v99:D5, 4v99:AQ, 4v99:Be, 4v99:Bj, 4v99:E5, 4v99:BL, 4v99:Bo, 4v99:Bt, 4v99:DV, 4v99:By, 4v99:Cp, 4v99:B4, 4v99:Df, 4v99:CA, 4v99:DG, 4v99:CF, 4v99:Cz, 4v99:CB, 4v99:CK, 4v99:CP, 4v99:EG, 4v99:BB, 4v99:CU, 4v99:CZ, 4v99:DQ, 4v99:Af, 4v99:Ce, 4v99:Cj, 4v99:EQ, 4v99:Co, 4v99:Du, 4v99:CQ, 4v99:Ct, 4v99:Cy, 4v99:Eu, 4v99:B5, 4v99:C4, 4v99:Bp, 4v99:DA, 4v99:AL, 4v99:DF, 4v99:Bz, 4v99:DK, 4v99:DP, 4v99:Ep, 4v99:DU, 4v99:Dp, 4v99:CL, 4v99:DZ, 4v99:Az, 4v99:De, 4v99:Cf, 4v99:Dj, 4v99:CV, 4v99:Do, 4v99:Ap, 4v99:Dt, 4v99:CG, 4v99:Dy, 4v99:D4, 4v99:EB, 4v99:Bf, 4v99:EA, 4v99:Ak, 4v99:EF, 4v99:C5, 4v99:EK, 4v99:DB, 4v99:EP, 4v99:EU, 4v99:Ea, 4v99:EZ, 4v99:Ef, 4v99:Ee, 4v99:Ek, 4v99:AB, 4v99:Ej, 4v99:BV, 4v99:Eo, 4v99:Aa, 4v99:Et, 4v99:Cu, 4v99:Ey, 4v99:Dk, 4v99:E4, 4v99:FA, 4v99:JV, 4v99:FF, 4v99:F5, 4v99:FK, 4v99:Ia, 4v99:FP, 4v99:Ga, 4v99:FU, 4v99:Ha, 4v99:FZ, 4v99:Iz, 4v99:Fe, 4v99:Gk, 4v99:Fj, 4v99:Jz, 4v99:Fo, 4v99:IL, 4v99:FG, 4v99:Ft, 4v99:Fy, 4v99:JL, 4v99:F4, 4v99:GQ, 4v99:GA, 4v99:Gu, 4v99:Fu, 4v99:GF, 4v99:GK, 4v99:Hk, 4v99:GG, 4v99:GP, 4v99:FV, 4v99:GU, 4v99:GZ, 4v99:I5, 4v99:FQ, 4v99:Ge, 4v99:Gj, 4v99:J5, 4v99:GL, 4v99:Go, 4v99:Gt, 4v99:IV, 4v99:Gy, 4v99:G4, 4v99:If, 4v99:HA, 4v99:IG, 4v99:HF, 4v99:Hz, 4v99:HB, 4v99:HK, 4v99:HP, 4v99:JG, 4v99:GB, 4v99:HU, 4v99:HZ, 4v99:IQ, 4v99:Ff, 4v99:He, 4v99:Hj, 4v99:JQ, 4v99:Ho, 4v99:Iu, 4v99:HQ, 4v99:Ht, 4v99:Hy, 4v99:Ju, 4v99:G5, 4v99:H4, 4v99:Gp, 4v99:IA, 4v99:FL, 4v99:IF, 4v99:Gz, 4v99:IK, 4v99:IP, 4v99:Jp, 4v99:IU, 4v99:Ip, 4v99:HL, 4v99:IZ, 4v99:Fz, 4v99:Ie, 4v99:Hf, 4v99:Ij, 4v99:HV, 4v99:Io, 4v99:Fp, 4v99:It, 4v99:HG, 4v99:Iy, 4v99:I4, 4v99:JB, 4v99:Gf, 4v99:JA, 4v99:Fk, 4v99:JF, 4v99:H5, 4v99:JK, 4v99:IB, 4v99:JP, 4v99:JU, 4v99:Ja, 4v99:JZ, 4v99:Jf, 4v99:Je, 4v99:Jk, 4v99:FB, 4v99:Jj, 4v99:GV, 4v99:Jo, 4v99:Fa, 4v99:Jt, 4v99:Hu, 4v99:Jy, 4v99:Ik, 4v99:J4, 4v99:Hg
15 6g13:B 113 45 0.0524 0.1327 0.3333 7.0 6g13:A
16 3s4x:A 367 53 0.0734 0.0572 0.3962 7.2 1bls:A, 1bls:B, 1ga0:A, 1onh:A, 1q2q:A, 2q9m:A, 2q9n:A, 1rgz:A, 1s6r:A, 7ti1:A, 5xhr:A, 4xux:A, 1y54:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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