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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GVTPVAVMTKPLPCPGKCIYCPTFAATPQSYTPESPAVLRAKSCEYQAYKQVALRLRIIQDMGHPTDKVELIIMGGTFLS
ADITYQYGFIKDCYDALNGVVAGSLEEAKTINETAQHRCVGLCIETRPDICGKAEIQRMIDFGTTRVELGVQMLDDDIYK
LVERGHRVSDVAEATCLLREYGLKVHYHWMPGLPGSSPEKDLALSRMVFEDPRFCPDGLKLYPTMVVEGTILEQWWKEGR
YTPYPNGTMTGLIADIKALVPPYVRISRVRCIREPTLRRLDYPASGGKEIFLSFEDASDTLYGLLRLRIPCASLPVLGQK
YGAKTGLVRALHVGGRGLGRKLLAEAECLARDEFGLDSLAILSGVGAREYYRSLGYELVAGYMCKHLD

The query sequence (length=388) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5l7j:A 406 403 0.9948 0.9507 0.9578 0.0 6ia6:A, 5l7l:A
2 8asw:C 527 449 0.4330 0.3188 0.3742 1.70e-91 8asv:C, 6qk7:C
3 8pty:C 440 440 0.4459 0.3932 0.3932 1.50e-88 8avg:C
4 8ptx:C 538 463 0.4485 0.3234 0.3758 3.65e-84 8ptz:C, 8pu0:C
5 6fd2:A 454 128 0.0747 0.0639 0.2266 0.39 6fd2:B
6 1ghe:B 171 46 0.0490 0.1111 0.4130 1.4 1ghe:A, 1j4j:A, 1j4j:B
7 8cff:A 823 37 0.0309 0.0146 0.3243 2.6 8cff:C, 8cff:E, 8cff:G, 8cgs:A, 8cgs:C, 8cgs:E, 8cgs:G, 8ch9:A, 8ch9:C, 8ch9:E, 8ch9:G, 1g8j:A, 1g8j:C, 1g8k:A, 1g8k:C, 1g8k:E, 1g8k:G
8 5jph:B 144 44 0.0387 0.1042 0.3409 3.3 5jph:A, 5jph:C
9 2p51:A 255 63 0.0412 0.0627 0.2540 3.7 3g0z:A, 3g10:A
10 3bow:A 680 75 0.0515 0.0294 0.2667 4.3 3df0:A, 1mdw:A, 1mdw:B
11 8r34:A 485 23 0.0309 0.0247 0.5217 4.6 8r34:B
12 4efc:A 452 61 0.0412 0.0354 0.2623 5.6 4efc:B
13 3hng:A 288 123 0.0619 0.0833 0.1951 5.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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