Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GVSGSCNIDVVCPEGNGHRDVIRSVAAYSRQGTMWCTGSLVNNSANDKKMYFLTANHCGMTTAAIASSMVVYWNYQNSTC
RAPGSSSSGANGDGSLAQSQTGAVVRATNAASDFTLLELNTAANPAYNLFWAGWDRRDQNFAGATAIHHPNVAEKRISHS
TVATEISGYNGATGTSHLHVFWQASGGVTEPGSSGSPIYSPEKRVLGQLHGGPSSCSATGADRSDYYGRVFTSWTGGGTS
ATRLSDWLDAAGTGAQFIDGLDST

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4nsy:B 265 264 0.9962 0.9925 0.9962 0.0 4nsv:A, 4nsv:B, 4nsy:A
2 1arc:A 263 263 0.7765 0.7795 0.7795 1.82e-155
3 5da9:B 400 68 0.0871 0.0575 0.3382 0.79
4 5da9:A 433 68 0.0871 0.0531 0.3382 0.83 5dac:A, 5dac:B
5 7zr1:D 780 68 0.0871 0.0295 0.3382 1.0 7zr1:C
6 1oxg:A 241 100 0.1136 0.1245 0.3000 1.1 1ab9:B, 1ab9:C, 1afq:B, 1afq:C, 3bg4:B, 3bg4:C, 1ca0:B, 1ca0:C, 1ca0:G, 1ca0:H, 1cbw:B, 1cbw:C, 1cbw:G, 1cbw:H, 1cho:F, 1cho:G, 2cha:B, 2cha:F, 2cha:C, 2cha:G, 4cha:B, 4cha:C, 4cha:F, 4cha:G, 5cha:B, 5cha:F, 5cha:G, 6cha:B, 6cha:C, 6cha:F, 6cha:G, 6di8:B, 6di8:C, 6di8:L, 6di8:E, 6di8:F, 6di8:I, 6di8:K, 6di8:H, 1dlk:B, 1dlk:D, 1gct:B, 1gct:C, 2gch:F, 2gch:G, 2gct:B, 2gct:C, 3gch:B, 3gch:C, 3gct:F, 3gct:G, 4gch:F, 4gch:G, 5gch:F, 5gch:G, 6gch:F, 6gch:G, 7gch:F, 7gch:G, 8gch:F, 8gch:G, 1gg6:B, 1gg6:C, 1ggd:B, 1ggd:C, 1gha:F, 1gha:G, 1ghb:F, 1ghb:G, 1gmc:F, 1gmc:G, 1gmd:F, 1gmd:G, 1gmh:F, 1gmh:G, 2gmt:B, 2gmt:C, 1hja:B, 1hja:C, 7jrx:B, 7jrx:C, 7jrx:b, 7jrx:c, 1k2i:1, 1mtn:B, 1mtn:C, 1mtn:F, 1mtn:G, 1n8o:B, 1n8o:C, 2p8o:B, 2p8o:C, 4q2k:A, 4q2k:B, 4q2k:C, 4q2k:D, 7qiq:B, 7qiq:C, 7qiq:F, 7qiq:G, 7qir:B, 7qir:C, 7qir:F, 7qir:G, 7qis:B, 7qis:C, 7qis:F, 7qis:G, 7qit:B, 7qit:C, 7qit:F, 7qit:G, 5r42:B, 5r42:C, 5r43:B, 5r43:C, 5r44:B, 5r44:C, 5r45:B, 5r45:C, 5r46:B, 5r46:C, 5r47:B, 5r47:C, 5r48:B, 5r48:C, 5r49:B, 5r49:C, 5r4a:B, 5r4a:C, 5r4b:B, 5r4b:C, 5r4c:B, 5r4c:C, 5r4d:B, 5r4d:C, 3ru4:D, 3ru4:E, 1vgc:B, 1vgc:C, 2vgc:B, 2vgc:C, 3vgc:B, 3vgc:C, 4vgc:B, 4vgc:C, 1yph:C, 1yph:E, 1yph:D, 1yph:F
7 3m83:A 325 129 0.1364 0.1108 0.2791 1.3 5jib:A, 5jib:B, 5jib:C, 5jib:D, 5jib:E, 5jib:F, 3m81:A, 3m81:C, 3m81:B, 3m81:D, 3m81:E, 3m81:F, 3m82:A, 3m82:C, 3m82:B, 3m82:D, 3m82:E, 3m82:F, 3m83:B, 3m83:C, 3m83:D, 3m83:E, 3m83:F
8 8jq5:B 421 114 0.1023 0.0641 0.2368 2.2 8jq3:A, 8jq3:B, 8jq3:C, 8jq3:D, 8jq4:A, 8jq4:B, 8jq4:C, 8jq4:D, 8jq5:A, 8jq5:C, 8jq5:D, 8jq6:A, 8jq6:B, 8jq6:C, 8jq6:D
9 2as9:A 207 42 0.0606 0.0773 0.3810 2.5 2as9:B
10 3vdd:A 280 36 0.0530 0.0500 0.3889 4.6 8ay4:A, 3dpr:A, 1fpn:1, 1v9u:1
11 8z4r:A 465 37 0.0644 0.0366 0.4595 5.6 8z4q:A, 8z4s:A
12 1fn8:A 224 34 0.0606 0.0714 0.4706 7.0 1fy4:A, 1fy5:A, 1gdn:A, 1gdq:A, 1gdu:A, 1pq5:A, 1pq7:A, 1pq8:A, 1try:A, 1xvm:A
13 4mvn:D 200 115 0.1023 0.1350 0.2348 7.1 4mvn:A, 4mvn:B, 4mvn:C, 3ufa:A, 3ufa:B
14 4wv3:B 518 44 0.0530 0.0270 0.3182 7.9 4wv3:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218