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BioLiP
>protein
GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTTEGEQI
AQLIAGYIDIIL

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mfs:A 370 92 1.0000 0.2486 1.0000 8.27e-62 2g35:A, 2k00:A, 1mk7:B, 1mk7:D, 1mk9:B, 1mk9:D, 1mk9:F, 1mk9:H, 2mwn:B, 1y19:B, 1y19:D, 1y19:F, 1y19:H, 1y19:J, 1y19:L
2 8tec:A 448 70 0.2065 0.0424 0.2714 0.001 8tee:A, 8tee:B
3 3n91:A 315 58 0.1848 0.0540 0.2931 2.8
4 2c2c:A 112 57 0.1630 0.1339 0.2632 3.4 3c2c:A
5 7txl:A 275 45 0.1630 0.0545 0.3333 3.6 7txk:A, 7txk:B, 7txl:B
6 3tto:A 1055 31 0.1304 0.0114 0.3871 5.3 3tto:B, 3tto:C, 3tto:D, 3ttq:A, 4ttu:A, 4tvc:A, 4tvd:A
7 5jb3:S 67 46 0.1522 0.2090 0.3043 5.3 5jbh:S, 6sw9:S, 6swc:S, 6swe:S, 4v4n:BS, 4v6u:AS, 7zag:S, 7zah:S, 7zai:S, 7zhg:S
8 7zaz:CCC 690 15 0.0761 0.0101 0.4667 8.4
9 8h3m:C 930 21 0.1196 0.0118 0.5238 8.9
10 7xu5:B 938 21 0.1196 0.0117 0.5238 8.9 7xu5:A, 7xu5:C
11 7q9f:A 1009 21 0.1196 0.0109 0.5238 8.9 7akd:C, 7l56:B, 7l56:C, 7l56:A, 7q9f:B
12 7od3:A 1012 21 0.1196 0.0109 0.5238 8.9 7od3:B, 7od3:C
13 7tei:B 1042 21 0.1196 0.0106 0.5238 8.9
14 7wuh:E 1044 21 0.1196 0.0105 0.5238 8.9 7wuh:A, 7xu3:B, 7xu3:A, 7xu3:C, 6zb5:A, 6zb5:C, 6zb5:B
15 8xus:B 1063 21 0.1196 0.0103 0.5238 8.9 8if2:B
16 8bon:B 1070 21 0.1196 0.0103 0.5238 8.9 8bon:A, 8bon:C, 7nd7:A, 7nd7:B, 7nd7:C, 8xut:B, 8xut:A
17 8hlc:A 1081 21 0.1196 0.0102 0.5238 8.9 7e7d:A, 7e7d:B, 7e7d:C, 8h3e:A, 8h3e:B, 8h3e:C, 8hlc:B, 8hlc:C, 7odl:A, 7odl:B, 7odl:C, 7wgx:A, 7wgx:B, 7wgx:C, 6zb4:C, 6zb4:B, 6zb4:A, 6zoz:A, 6zoz:B, 6zoz:C
18 8cya:A 1100 21 0.1196 0.0100 0.5238 8.9 7nt9:A, 7nt9:B, 7nt9:C, 7nta:B, 7nta:C, 7nta:A, 7ntc:A, 7ntc:B, 8p9y:C
19 7jji:A 1109 21 0.1196 0.0099 0.5238 8.9 8aaa:A, 7b62:A, 7beh:E, 7bem:E, 8bec:B, 8bec:D, 7d2z:B, 7d30:B, 7dwy:A, 7dwy:B, 7dwy:C, 7e7b:A, 7e7b:B, 7e7b:C, 7f5g:C, 8j1q:C, 8j26:C, 7jji:C, 7jji:B, 7kmh:C, 7l2c:B, 7l4z:B, 7l4z:D, 7l4z:A, 7l4z:C, 7l4z:E, 7ldj:A, 7ly3:A, 7ly3:B, 7q0i:D, 8qh0:A, 7qur:A, 7qur:B, 7qur:C, 7qus:A, 7qus:B, 7qus:C, 7r6w:R, 7sn0:C, 7wd8:B, 7wgv:A, 7wgv:B, 7wgv:C, 7wk8:A, 7x08:A, 7x08:B, 7x08:C, 7x2l:E, 7x93:G, 7xtz:A, 7xtz:C, 7xtz:B, 7xu0:C, 7xu0:B, 7xu1:A, 7xu6:A, 7xu6:C, 7xu6:B, 7xwa:D, 7y0c:E, 7y0c:R, 7yck:A, 7z8o:A, 7zbu:A, 6zp2:A, 6zp2:C, 6zp2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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