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BioLiP
>protein
GVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVC
LRSQGLPEGR

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5oc6:A 90 90 1.0000 1.0000 1.0000 6.20e-63
2 3adi:A 71 64 0.2889 0.3662 0.4062 2.23e-04
3 2b7h:A 141 57 0.2111 0.1348 0.3333 1.6 2b7h:C, 1fhj:A, 1fhj:C, 3gou:A, 3gou:C, 3pel:A, 2qls:A, 2qls:C
4 3d4x:A 141 62 0.2222 0.1418 0.3226 1.7 3d4x:C, 3gqp:A, 3gqp:C, 3gqr:A, 3gqr:C, 3gqr:E, 3gqr:G, 3gys:A, 3gys:C, 3gys:E, 3gys:G
5 7uab:A 481 38 0.1111 0.0208 0.2632 1.8 7uab:D
6 7uac:H 546 38 0.1111 0.0183 0.2632 1.8 7uab:E, 7uab:H, 7uae:A, 7uaf:B, 7uaf:A, 7uaf:C, 7uaf:D, 7uai:E, 7uai:B, 7uai:C, 7uai:D
7 4yu3:A 141 57 0.2222 0.1418 0.3509 1.9 4yu4:A, 4yu4:C
8 8eo6:A 268 48 0.1556 0.0522 0.2917 4.9 8eo6:B
9 6lla:B 363 22 0.1000 0.0248 0.4091 6.4 6lk2:A, 6lk2:B, 6lk2:C, 6lk2:D, 6lla:A, 6lla:C, 6lla:D
10 3nwa:A 608 47 0.1556 0.0230 0.2979 8.1 4hsi:C, 3nw8:B, 3nw8:A, 3nw8:C, 3nwa:B, 3nwa:C, 3nwa:D, 3nwd:C, 3nwf:A, 3nwf:B
11 8ctn:B 96 25 0.1222 0.1146 0.4400 9.7 8cts:B, 8ctu:B, 8cu2:B, 8cu3:B, 8cu4:B, 6dz1:B, 6fiz:C, 6fiz:D, 6fiz:E, 6fiz:G, 6fiz:H, 6fiz:J, 6fiz:L, 6fiz:N, 6fiz:A, 6fiz:O, 6fiz:P, 4r50:B, 4r6z:A, 4r6z:B, 4r7c:C, 4r8c:A, 4ro2:A, 4ro2:B, 4ro2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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