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BioLiP
>protein
GVHRVGYTHPSTLPVPCAQRWDLRLARARIFQEYIEEKAPGAWQLEDERSMSPEFKTFTGYPMRDMRPGYGQNLPDYIMK
KRLPNNTHYELFARRDIPNEDNAMYGKYLYDMTVHGTSLPSTYRMHKDINKAQRNDRKLSGNRFKVLCSSGAKNPPSGWE
PIPDA

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ane:s 165 165 0.9030 0.9030 0.9030 2.07e-113 7aor:s, 6hiv:Ci, 6hiw:Ci, 6hiz:Ci, 7pua:Ci, 7pub:Ci, 6sg9:Ci, 6sgb:Ci
2 1rrv:A 401 43 0.0788 0.0324 0.3023 0.77 1rrv:B
3 8ea6:B 124 67 0.1091 0.1452 0.2687 1.2 8ea5:A, 8ea5:B, 8ea6:A, 8ea7:A, 8ea7:B, 8ea8:B, 8ea8:A, 8ea9:B, 8ea9:A, 8eaa:B, 8eaa:A, 8eab:A, 8eab:B, 8se5:B, 8se5:A, 8se6:A, 8se6:B
4 1pn3:A 391 33 0.0727 0.0307 0.3636 3.0 1pn3:B, 1pnv:B, 1pnv:A
5 2k8d:A 151 34 0.0848 0.0927 0.4118 3.8
6 8urb:A 921 34 0.0848 0.0152 0.4118 6.1 8g6r:A
7 3ndz:A 345 59 0.1091 0.0522 0.3051 7.3 3ndz:C, 3ndz:B, 3ndz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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