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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLGY
DYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1txc:A 157 157 1.0000 1.0000 1.0000 5.64e-110 1txc:B
2 4ryv:A 155 154 0.6624 0.6710 0.6753 5.17e-68
3 2qim:A 157 154 0.5924 0.5924 0.6039 4.53e-60 3e85:A, 5mxb:A, 5mxw:A
4 6awr:A 156 157 0.5796 0.5833 0.5796 2.32e-59 6awr:B, 6aws:A, 6aws:C, 6awt:A, 6awt:B, 6awt:C, 6awt:D, 6awu:A, 6awu:B, 6awu:C, 6awu:D, 6awv:A, 6awv:B, 6awv:C, 6aww:B, 6aww:E, 6aww:D, 6aww:C, 6ax0:A, 6ax0:B, 6b1d:A, 6b1d:C, 4ma6:A
5 6v8l:D 152 153 0.5796 0.5987 0.5948 2.07e-56 6v8m:A, 6v8m:B, 6v8s:A, 6v8s:G, 6v8s:B, 6v8s:C, 6v8s:D, 6v8s:F, 6v8s:E, 6v8s:H, 6v8s:I, 6v8s:O, 6v8s:J, 6v8s:K, 6v8s:L, 6v8s:N, 6v8s:M, 6v8s:P
6 4c94:A 161 158 0.4522 0.4410 0.4494 2.42e-40 4c94:B, 4c94:C, 4c94:D, 4c94:E
7 4c9i:F 162 158 0.4140 0.4012 0.4114 8.31e-38
8 4a80:A 159 158 0.4076 0.4025 0.4051 3.04e-33 4a81:A, 4a83:A, 4a84:A, 4a85:A, 4a86:A, 4a87:A, 4a8g:A, 4a8v:A, 1fm4:A, 4mns:A, 4qip:A
9 5i8f:A 164 148 0.3376 0.3232 0.3581 2.55e-24 4n3e:A, 4n3e:B, 4n3e:Z, 4n3e:b, 4n3e:C, 4n3e:D, 4n3e:E, 4n3e:F, 4n3e:G, 4n3e:H, 4n3e:I, 4n3e:J, 4n3e:K, 4n3e:L, 4n3e:P, 4n3e:M, 4n3e:N, 4n3e:O, 4n3e:Q, 4n3e:S, 4n3e:R, 4n3e:U, 4n3e:V, 4n3e:W, 4n3e:X, 4n3e:Y, 4n3e:a, 6sjj:B, 6sjj:j, 6sjj:A, 6sjj:R, 6sjj:Q, 6sjj:P, 6sjj:O, 6sjj:N, 6sjj:M, 6sjj:L, 6sjj:K, 6sjj:J, 6sjj:I, 6sjj:a, 6sjj:Y, 6sjj:H, 6sjj:G, 6sjj:F, 6sjj:D, 6sjj:f, 6sjj:E, 6sjj:C, 6sjj:e, 6sjj:d, 6sjj:c, 6sjj:b, 6sjj:Z, 6sjj:X, 6sjj:W, 6sjj:V, 6sjj:U, 6sjj:T, 6sjj:S, 6sjj:i, 6sjj:h, 6sjj:g
10 7qb6:A 164 157 0.3949 0.3780 0.3949 4.04e-23 4gy9:A, 4jhg:A, 4jhh:A, 4jhi:A
11 8h3j:A 162 154 0.2994 0.2901 0.3052 8.37e-17
12 2flh:B 153 49 0.1274 0.1307 0.4082 0.003 3c0v:A, 3c0v:B, 3c0v:C, 3c0v:D, 2flh:A, 2flh:C, 2flh:D, 4psb:A
13 3nj1:A 182 74 0.1146 0.0989 0.2432 0.024 5jnn:A, 3kaz:B, 3kb0:A, 3kb3:A, 3kdi:A, 4la7:A, 4lg5:A, 4lga:A, 4lgb:A, 7mwn:A, 3nj0:A, 3nj0:B, 3nj0:C, 3nmh:A, 3nmh:B, 3nmh:C, 3nmp:A, 3nmp:B, 3nmp:C, 3nmt:A, 3nmv:A, 3nr4:A, 3nr4:B, 3nr4:C, 3ns2:A, 3ns2:B, 3ns2:C, 3ujl:A, 5vr7:A, 5vro:A, 5vs5:A, 5vsq:A, 5vsr:A, 5vt7:A
14 1dek:A 241 89 0.1911 0.1245 0.3371 0.024 1dek:B, 1del:A, 1del:B
15 5hwn:B 310 61 0.1019 0.0516 0.2623 0.21 5hwm:A, 5hwm:B, 5hwm:C, 5hwm:D, 5hwn:A, 5hwn:C, 5hwn:D, 4ur8:A, 4ur8:B, 4ur8:C, 4ur8:D
16 1pca:A 402 63 0.1465 0.0572 0.3651 0.28
17 4q0k:A 154 48 0.0955 0.0974 0.3125 0.32
18 3m1r:D 321 42 0.0892 0.0436 0.3333 2.0 3m1r:A, 3m1r:B, 3m1r:C, 3m1r:E, 3m1r:F
19 1urg:A 373 91 0.1465 0.0617 0.2527 2.9 1urd:A, 1urd:B, 1urs:A, 1urs:B
20 4bf7:A 335 41 0.0828 0.0388 0.3171 4.1
21 8t3k:C 541 42 0.0892 0.0259 0.3333 5.0
22 3ex7:C 392 61 0.1210 0.0485 0.3115 5.4 8c6j:7, 3ex7:H, 9fmd:7, 2hyi:C, 2hyi:I, 8i0w:u, 6icz:u, 2j0q:A, 2j0q:B, 2j0s:A, 2j0u:A, 6qdv:7, 2xb2:A, 2xb2:X, 5xjc:u, 5yzg:u, 7znj:A, 7znj:a, 7znj:F, 7znj:f, 7znj:K, 7znj:k
23 4oic:A 182 58 0.0828 0.0714 0.2241 6.0
24 8fhk:C 574 42 0.0892 0.0244 0.3333 6.3 8fmv:C, 8fpf:C, 7m33:C, 8szc:C, 8t1p:C
25 1yjt:A 75 33 0.0701 0.1467 0.3333 6.8 1yjv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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