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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANLGY
NYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2qim:A 157 155 1.0000 0.9873 1.0000 2.95e-108 3e85:A, 5mxb:A, 5mxw:A
2 6awr:A 156 154 0.6710 0.6667 0.6753 9.32e-72 6awr:B, 6aws:A, 6aws:C, 6awt:A, 6awt:B, 6awt:C, 6awt:D, 6awu:A, 6awu:B, 6awu:C, 6awu:D, 6awv:A, 6awv:B, 6awv:C, 6aww:B, 6aww:E, 6aww:D, 6aww:C, 6ax0:A, 6ax0:B, 6b1d:A, 6b1d:C, 4ma6:A
3 4ryv:A 155 155 0.6000 0.6000 0.6000 6.57e-62
4 1txc:A 157 154 0.6000 0.5924 0.6039 5.06e-60 1txc:B
5 6v8l:D 152 150 0.5226 0.5329 0.5400 7.79e-50 6v8m:A, 6v8m:B, 6v8s:A, 6v8s:G, 6v8s:B, 6v8s:C, 6v8s:D, 6v8s:F, 6v8s:E, 6v8s:H, 6v8s:I, 6v8s:O, 6v8s:J, 6v8s:K, 6v8s:L, 6v8s:N, 6v8s:M, 6v8s:P
6 4c9i:F 162 155 0.5161 0.4938 0.5161 7.66e-48
7 4c94:A 161 156 0.5290 0.5093 0.5256 1.74e-45 4c94:B, 4c94:C, 4c94:D, 4c94:E
8 4a80:A 159 156 0.4903 0.4780 0.4872 1.15e-44 4a81:A, 4a83:A, 4a84:A, 4a85:A, 4a86:A, 4a87:A, 4a8g:A, 4a8v:A, 1fm4:A, 4mns:A, 4qip:A
9 5i8f:A 164 154 0.4129 0.3902 0.4156 4.27e-32 4n3e:A, 4n3e:B, 4n3e:Z, 4n3e:b, 4n3e:C, 4n3e:D, 4n3e:E, 4n3e:F, 4n3e:G, 4n3e:H, 4n3e:I, 4n3e:J, 4n3e:K, 4n3e:L, 4n3e:P, 4n3e:M, 4n3e:N, 4n3e:O, 4n3e:Q, 4n3e:S, 4n3e:R, 4n3e:U, 4n3e:V, 4n3e:W, 4n3e:X, 4n3e:Y, 4n3e:a, 6sjj:B, 6sjj:j, 6sjj:A, 6sjj:R, 6sjj:Q, 6sjj:P, 6sjj:O, 6sjj:N, 6sjj:M, 6sjj:L, 6sjj:K, 6sjj:J, 6sjj:I, 6sjj:a, 6sjj:Y, 6sjj:H, 6sjj:G, 6sjj:F, 6sjj:D, 6sjj:f, 6sjj:E, 6sjj:C, 6sjj:e, 6sjj:d, 6sjj:c, 6sjj:b, 6sjj:Z, 6sjj:X, 6sjj:W, 6sjj:V, 6sjj:U, 6sjj:T, 6sjj:S, 6sjj:i, 6sjj:h, 6sjj:g
10 7qb6:A 164 158 0.4452 0.4207 0.4367 5.24e-32 4gy9:A, 4jhg:A, 4jhh:A, 4jhi:A
11 8h3j:A 162 157 0.3226 0.3086 0.3185 2.59e-19
12 2flh:B 153 135 0.2000 0.2026 0.2296 6.87e-04 3c0v:A, 3c0v:B, 3c0v:C, 3c0v:D, 2flh:A, 2flh:C, 2flh:D, 4psb:A
13 4q0k:A 154 57 0.1097 0.1104 0.2982 0.063
14 3nj1:A 182 51 0.0774 0.0659 0.2353 0.10 5jnn:A, 3kaz:B, 3kb0:A, 3kb3:A, 3kdi:A, 4la7:A, 4lg5:A, 4lga:A, 4lgb:A, 7mwn:A, 3nj0:A, 3nj0:B, 3nj0:C, 3nmh:A, 3nmh:B, 3nmh:C, 3nmp:A, 3nmp:B, 3nmp:C, 3nmt:A, 3nmv:A, 3nr4:A, 3nr4:B, 3nr4:C, 3ns2:A, 3ns2:B, 3ns2:C, 3ujl:A, 5vr7:A, 5vro:A, 5vs5:A, 5vsq:A, 5vsr:A, 5vt7:A
15 5ujv:A 192 39 0.0581 0.0469 0.2308 1.7 5ujv:B, 5ujv:C
16 8kar:A 414 39 0.1032 0.0386 0.4103 1.8 8kao:C, 8kar:B, 8kar:C
17 1brw:A 433 58 0.1032 0.0370 0.2759 3.3 1brw:B
18 6z1m:A 423 38 0.1032 0.0378 0.4211 6.3 6z1m:B, 6z1m:C
19 3w78:A 210 31 0.0903 0.0667 0.4516 6.7 3w78:B, 3w78:D, 3w78:C, 3w79:A, 3w79:B, 3w79:C, 3w79:D, 3w7a:A, 3w7a:B, 3w7a:C, 3w7a:D
20 6kif:K 78 20 0.0645 0.1282 0.5000 8.7 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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