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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRID
NYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2air:B 153 145 0.9932 0.9477 1.0000 2.40e-106 2a0f:B, 1acm:B, 1acm:D, 2air:H, 1at1:B, 1at1:D, 2at1:B, 2at1:D, 3at1:B, 3at1:D, 4at1:B, 4at1:D, 5at1:B, 5at1:D, 6at1:B, 6at1:D, 7at1:B, 7at1:D, 8at1:B, 8at1:D, 8atc:B, 8atc:D, 9atc:B, 1d09:B, 1d09:D, 3d7s:B, 3d7s:D, 4e2f:D, 4e2f:B, 4e2f:J, 4e2f:L, 4e2f:H, 4e2f:F, 1ezz:B, 1ezz:D, 4f04:B, 4f04:D, 1f1b:B, 1f1b:D, 4fyv:B, 4fyv:D, 4fyw:B, 4fyw:D, 4fyx:B, 4fyx:D, 4fyy:B, 4fyy:D, 2fzc:B, 2fzc:D, 2fzg:B, 2fzg:D, 2fzk:B, 2fzk:D, 2h3e:B, 2h3e:D, 2hse:B, 2hse:D, 1i5o:B, 1i5o:D, 2ipo:B, 2ipo:D, 4kgv:B, 4kgv:D, 4kgx:B, 4kgx:D, 4kgz:B, 4kgz:D, 4kh0:B, 4kh0:D, 4kh1:B, 4kh1:D, 6kj8:B, 6kj8:D, 6kj8:F, 6kja:B, 6kja:D, 6kja:F, 6kjb:B, 3mpu:B, 3mpu:D, 3mpu:F, 1nbe:B, 1nbe:D, 1q95:G, 1q95:H, 1q95:I, 1q95:J, 1q95:K, 1q95:L, 2qg9:B, 2qg9:D, 2qgf:B, 2qgf:D, 1r0b:G, 1r0b:H, 1r0b:I, 1r0b:J, 1r0b:K, 1r0b:L, 1r0c:B, 1r0c:H, 1raa:B, 1raa:D, 1rab:B, 1rab:D, 1rac:B, 1rac:D, 1rad:B, 1rad:D, 1rae:B, 1rae:D, 1raf:B, 1raf:D, 1rag:B, 1rag:D, 1rah:B, 1rah:D, 1rai:B, 1rai:D, 1sku:D, 1tth:B, 1tth:D, 1tu0:B, 1tu0:D, 1tug:B, 1tug:D, 1xjw:B, 1xjw:D, 1za1:B, 1za1:D, 1za2:B, 1za2:D
2 2atc:B 152 145 0.8836 0.8487 0.8897 1.71e-91
3 2be7:D 133 136 0.5068 0.5564 0.5441 4.53e-51 2be7:E, 2be7:F
4 2be9:B 148 146 0.3493 0.3446 0.3493 7.76e-27 1pg5:B
5 2yww:B 142 145 0.3836 0.3944 0.3862 9.38e-26 2yww:A
6 1vyj:G 260 64 0.1233 0.0692 0.2812 8.3 1axc:A, 1axc:C, 1axc:E, 6cbi:C, 6cbi:A, 6cbi:D, 6cbi:E, 8cob:A, 8cob:C, 8cob:E, 4d2g:C, 4d2g:B, 5e0u:A, 5e0u:B, 5e0u:C, 5e0v:A, 5e0v:B, 6eht:C, 6eht:B, 8f5q:A, 8f5q:C, 8f5q:E, 6gis:A, 8gl9:A, 8gl9:B, 8gla:A, 8gla:B, 6gws:C, 6gws:A, 6gws:B, 6hvo:B, 6hvo:C, 6hvo:A, 5iy4:A, 5iy4:C, 5iy4:E, 6k3a:A, 6k3a:C, 6k3a:E, 7kq0:A, 7kq0:C, 7kq0:E, 7kq1:A, 7kq1:C, 7kq1:E, 7m5l:A, 7m5l:B, 7m5l:C, 7m5m:A, 7m5m:B, 7m5n:B, 7m5n:A, 5mav:C, 5mav:A, 5mav:B, 5mav:F, 5mav:D, 5mav:E, 5mlo:A, 5mlo:C, 5mlo:E, 5mlw:A, 5mlw:C, 5mlw:E, 7nv0:D, 7nv1:D, 3p87:A, 3p87:D, 3p87:B, 3p87:C, 3p87:E, 3p87:F, 6qc0:A, 6qc0:C, 6qc0:E, 6qcg:C, 6qcg:B, 6qcg:F, 6qcg:A, 6qcg:D, 6qcg:E, 7qo1:F, 4rjf:A, 4rjf:C, 4rjf:E, 1u76:A, 1u76:C, 1u76:E, 1u7b:A, 3vkx:A, 1vyj:A, 1vyj:C, 1vyj:E, 1vyj:I, 1vyj:K, 3wgw:A, 3wgw:B, 5yco:A, 5yco:B, 5yco:C, 5yd8:Z, 5yd8:X, 5yd8:Y, 4ztd:B, 4ztd:A, 4ztd:C, 2zvk:A, 2zvk:B, 2zvk:C, 2zvl:A, 2zvl:B, 2zvl:C, 2zvl:D, 2zvl:E, 2zvl:F, 2zvm:A, 2zvm:B, 2zvm:C
7 4gxb:A 263 49 0.1027 0.0570 0.3061 9.9 4tkn:A, 4tkn:B, 4tkn:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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