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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GVAKRTRKFATVKRIIGKQDERRKAEAVKKAEEEKRKKEKQAIREVPQMPSSMFFEHNEALVPPYNVLVDTNFLSRTVGA
KLPLLESAMDCLYASVNIIITSCVMAELEKLGPRYRVALMIARDERWQRLTCDHKGTYADDCIVDRVQKHRIYIVATNDR
DLKRRIRKIPGVPIMSVQKGKYAIERLPGA

The query sequence (length=190) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5oql:P 190 190 1.0000 1.0000 1.0000 2.25e-141 5jpq:d, 6rxt:UX, 6rxu:UX, 6rxv:UX, 6rxx:UX, 6rxy:UX, 6rxz:UX
2 7mq8:SL 192 185 0.5737 0.5677 0.5892 8.57e-72 7mq9:SL, 7mqa:SL
3 7d5s:5K 175 184 0.5158 0.5600 0.5326 9.61e-69 7ajt:UX, 7aju:UX, 7d4i:5K, 7d5t:5K, 7d63:5K, 6ke6:5K, 6lqp:5K, 6lqq:5K, 6lqr:5K, 6lqs:5K, 6lqt:5K, 6lqu:5K, 6lqv:5K, 7suk:SL, 5wlc:SL, 5wyj:U4, 5wyk:U4, 6zqb:UX, 6zqc:UX, 6zqd:UX, 6zqe:UX, 6zqg:UX
4 5yz4:A 133 128 0.4105 0.5865 0.6094 2.82e-54
5 4mj7:A 157 148 0.2211 0.2675 0.2838 1.14e-11 4mj7:B
6 6gos:D 396 29 0.0684 0.0328 0.4483 0.28 6grg:D
7 8sli:A 894 23 0.0579 0.0123 0.4783 2.0 8sli:D, 8sli:C, 8sli:B
8 8slw:A 921 23 0.0579 0.0119 0.4783 2.1 8slp:D, 8slp:A, 8slp:B, 8slp:C, 8slw:B, 8slw:C, 8slw:D
9 8toc:a 534 66 0.1053 0.0375 0.3030 3.3 8toc:b
10 4xeb:A 430 52 0.0684 0.0302 0.2500 5.5
11 4y5q:A 449 111 0.1368 0.0579 0.2342 6.4 9d8s:A, 3igo:A, 3mwu:A, 3ncg:A, 2wei:A
12 6cz7:A 814 32 0.0789 0.0184 0.4688 6.5 6cz7:C, 6cz8:C, 6cz8:A, 6cz9:A, 6cz9:C, 6cza:A, 6cza:C
13 7ums:b 276 40 0.0684 0.0471 0.3250 7.1 7ums:a, 7ums:c, 7ums:d, 7ums:e, 7ums:f, 7ums:g, 7ums:h, 7ums:i, 7ums:j, 7ums:k, 7ums:l, 7ums:m, 7ums:n, 7ums:o, 7ums:p, 7ums:q, 7ums:r, 7umt:a, 7umt:b, 7umt:c, 7umt:d, 7umt:e, 7umt:f, 7umt:g, 7umt:h, 7umt:i, 7umt:j, 7umt:k, 7umt:l, 7umt:m, 7umt:n, 7umt:o, 7umt:p, 7umt:q, 7umt:r
14 7o7s:A 1276 51 0.0895 0.0133 0.3333 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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