Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GTVSRPRGMRPKWHKKRIKRLKLRRRRMRQRSK

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8a98:n 33 33 1.0000 1.0000 1.0000 1.30e-15 7ase:D, 8ova:Bz, 8ove:Bz, 8ovj:n, 8rxh:Ln, 8rxx:Ln
2 4bac:A 368 13 0.2424 0.0217 0.6154 0.88 7adu:A, 7adv:A, 7adv:B, 4bac:B, 4bdy:A, 4bdz:A, 4be0:A, 4be1:A, 4be1:B, 4be2:A, 4be2:B, 3dlr:A, 4e7h:A, 4e7i:A, 4e7i:B, 4e7j:A, 4e7k:A, 4e7k:B, 4e7l:A, 4e7l:B, 5frm:A, 5frn:A, 5fro:A, 5fro:B, 4ikf:A, 3l2q:A, 3l2r:A, 3l2r:B, 3l2u:A, 3l2u:B, 3l2v:A, 3l2v:B, 3l2w:A, 3l2w:B, 5mma:A, 5mma:B, 5mmb:A, 5mmb:B, 5no1:A, 5no1:B, 3os0:A, 3os0:B, 3os1:A, 3os1:B, 3os2:A, 3oy9:A, 3oy9:B, 3oya:A, 3oya:B, 3oyb:A, 3oyb:B, 3oyc:A, 3oyd:A, 3oyd:B, 3oye:A, 3oye:B, 3oyf:A, 3oyf:B, 3oyg:A, 3oyg:B, 3oyh:A, 3oyh:B, 3oyi:A, 3oyi:B, 3oyj:A, 3oyj:B, 3oyk:A, 3oyk:B, 3oyl:A, 3oyl:B, 3oym:A, 3oym:B, 3oyn:A, 6rny:K, 6rny:O, 3s3m:A, 3s3n:A, 3s3o:A, 5uop:A, 5uoq:A, 2x6n:A, 2x6n:B, 2x6n:C, 2x6n:D, 2x6n:E, 2x6n:F, 2x6s:A, 2x6s:B, 2x6s:C, 2x6s:D, 2x6s:E, 2x6s:F, 4ztf:A, 4ztj:A
3 5h9i:A 240 31 0.3939 0.0542 0.4194 3.3
4 6tmf:c 37 21 0.4242 0.3784 0.6667 4.4 6skf:Bk, 6skg:Bk, 6sw9:0, 6swc:0, 6swd:0, 6th6:Bk, 7zag:0, 7zah:0, 7zai:0, 7zhg:0

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218