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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAPLDGEELIVEVL

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2mse:D 73 73 1.0000 1.0000 1.0000 1.43e-48
2 6xgu:B 134 76 0.6027 0.3284 0.5789 6.16e-25 1c1y:B, 1faq:A, 1far:A, 1gua:B, 7jhp:C, 3kuc:B, 6pts:D, 6ptw:D, 8t75:B, 8t75:D, 8t75:F, 8t75:H, 6xgv:B, 6xha:B, 6xhb:B, 6xi7:B
3 8jnb:B 81 73 0.5890 0.5309 0.5890 2.51e-23
4 8dgt:A 431 71 0.5890 0.0998 0.6056 8.54e-20 9axx:B, 9axy:A, 6b8u:A, 9bfb:A, 3c4c:A, 3c4c:B, 8c7x:A, 8c7x:B, 8c7y:A, 8c7y:B, 5c9c:A, 5csw:A, 5csx:A, 5ct7:A, 5ct7:B, 3d4q:A, 3d4q:B, 4dbn:A, 4dbn:B, 8dgs:A, 4e26:A, 4e26:B, 4e4x:A, 4e4x:B, 4ehe:A, 4ehe:B, 4ehg:A, 4ehg:B, 8f7o:A, 8f7o:B, 8f7p:A, 8f7p:B, 2fb8:A, 2fb8:B, 4fc0:B, 5fd2:A, 4g9c:A, 4g9c:B, 4g9r:A, 4g9r:B, 4h58:A, 5hid:A, 5hid:B, 5hie:A, 5hie:B, 3idp:B, 3idp:A, 3ii5:A, 3ii5:B, 5j18:A, 5j2r:A, 5jrq:A, 5jsm:A, 5jsm:B, 5jsm:C, 5jsm:D, 5jt2:A, 4jvg:B, 4jvg:A, 4jvg:C, 4jvg:D, 7k0v:A, 7k0v:B, 7k0v:C, 7k0v:D, 4ksp:A, 4ksp:B, 4ksq:A, 4ksq:B, 7m0t:A, 7m0u:A, 7m0v:A, 7m0w:A, 7m0x:A, 7m0y:A, 7m0z:A, 4mbj:A, 4mbj:B, 7mfd:A, 7mfe:A, 7mff:A, 7mff:B, 4mnf:A, 4mnf:B, 6n0p:A, 6n0p:B, 6n0q:A, 6nsq:A, 6nyb:A, 6p3d:A, 7p3v:A, 7p3v:B, 6p7g:A, 6p7g:B, 6p7g:C, 6p7g:D, 3ppj:A, 3ppj:B, 3ppk:A, 3ppk:B, 4pp7:A, 4pp7:B, 6pp9:A, 3prf:A, 3prf:B, 3pri:A, 3pri:B, 3psb:A, 3psb:B, 3psd:A, 3psd:B, 3q4c:A, 3q96:B, 8qqg:A, 8qqg:B, 8qqg:C, 4r5y:A, 4r5y:B, 4rzv:A, 4rzv:B, 7shv:A, 7shv:B, 3skc:A, 3skc:B, 3tv4:A, 3tv4:B, 3tv6:A, 3tv6:B, 6u2g:B, 6u2h:C, 6u2h:D, 6uuo:A, 1uwh:A, 1uwh:B, 1uwj:A, 1uwj:B, 6v2u:A, 6v2w:A, 6v34:A, 5vam:A, 5vam:B, 4wo5:A, 4wo5:B, 6xfp:A, 6xlo:A, 4xv9:A, 4yht:A, 4yht:B
5 6dfe:B 325 36 0.1781 0.0400 0.3611 3.3 6dfe:A, 2h1f:A, 2h1f:B, 2h1h:A, 2h1h:B
6 3rgl:A 292 32 0.1370 0.0342 0.3125 3.4 3rgl:B, 3ufg:A, 3ufg:B
7 1vci:A 353 27 0.1507 0.0312 0.4074 3.5
8 1r6v:A 671 13 0.1096 0.0119 0.6154 6.3
9 8jcc:H 94 50 0.2329 0.1809 0.3400 7.1 8jcc:D, 8jcd:D, 8jcd:H
10 3ec7:A 336 18 0.1370 0.0298 0.5556 7.4 3ec7:B, 3ec7:C, 3ec7:D, 3ec7:E, 3ec7:F, 3ec7:G, 3ec7:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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