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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GTVDLDAPVQKDTAMSLVSSFENSSTDWQAQYGYLEDIAAGRGYTGGLIGFTSGTGDMLELVRAYSASSPGNPLEQYIPA
LEAVNGTDSHAGLGQGFEQAWADAAETSEFRAAQDAERDRVYFDPAVAQGKADGLSALGQFAYYDTLVVHGPGSQRDAFG
GIRAEALSAALPPSQGGDETEYLEAFFDARNVIMREEPAHADTSRIDTAQRVFLQNGNFDLERPLTWSVYGDQYSLN

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4olt:B 237 237 0.9958 0.9958 0.9958 6.94e-174 4olt:A, 4qwp:A, 4qwp:B
2 7c6d:A 241 229 0.3671 0.3610 0.3799 5.73e-39
3 6lwu:A 242 239 0.3544 0.3471 0.3515 3.58e-36 6x2q:A
4 5hwa:A 259 201 0.2194 0.2008 0.2587 2.63e-06
5 5z2v:B 197 62 0.0886 0.1066 0.3387 3.5 5z2v:A
6 8fxi:C 630 79 0.1097 0.0413 0.3291 3.5 8fxi:D
7 5t8s:A 388 52 0.0717 0.0438 0.3269 8.2 5t8s:B, 5t8t:A, 5t8t:B
8 5eu6:E 244 68 0.0886 0.0861 0.3088 8.9 8dnt:B, 8dnt:I, 8dnt:P, 8dnt:W, 4mji:E, 4mji:J, 4ozf:H, 4ozg:F, 4ozg:H, 4ozh:F, 4ozh:H, 6px6:E, 7sg0:E, 6u3o:H, 6u3o:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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