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BioLiP
>protein
GTSQLAELVDAAAERLEVADPVAAFKWRAQLPIEDSGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAIEYSRFS
DWKLNPASAPPEPPDLSASRSAIDSLNNRMLSQIWSHWSLLSAPSCAAQLDRAKRDIVRSRHLDSLYQRALTTATQSYCQ
ALPPA

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ao2:A 165 165 1.0000 1.0000 1.0000 8.42e-119 2ao2:B, 2ao2:C, 2fp2:B
2 8pnh:A 386 152 0.2727 0.1166 0.2961 1.13e-09
3 8pnj:A 390 72 0.1455 0.0615 0.3333 5.20e-04
4 1ecm:B 95 58 0.1152 0.2000 0.3276 0.002 1ecm:A
5 6h2j:B 990 65 0.1091 0.0182 0.2769 1.4 4be7:B, 4be7:D, 4beb:A, 4beb:B, 4beb:C, 4beb:D, 4bec:A, 4bec:B, 6h2j:A, 2w00:A, 2w00:B, 4xjx:A, 4xjx:B
6 6j9f:C 1296 35 0.0848 0.0108 0.4000 2.4
7 6j9e:C 1288 35 0.0848 0.0109 0.4000 2.5
8 8ovh:A 400 44 0.0909 0.0375 0.3409 3.6 8ovh:B, 8ovh:C, 8ovh:D
9 3uvf:A 255 125 0.1455 0.0941 0.1920 5.6 3uvf:B
10 6r7u:B 308 29 0.0788 0.0422 0.4483 5.9 7od0:AAA, 7od0:BBB, 7od0:CCC, 7od0:DDD, 7od0:EEE, 7od0:FFF, 6r7u:A, 6r7v:A, 6r7w:A
11 2q3p:A 103 32 0.0545 0.0874 0.2812 8.4 1q4r:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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