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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GTRWAVLIAGSKGYHNYRHQADVCHMYQILRKGGVKDENIIVFMYDDIAYNESNPFPGIIINKPGGENVYKGVPKDYTGE
DINNVNFLAAILGNKSAIIGGSGKVLDTSPNDHIFIYYAHGAPGKIGMPSKPYLYADDLVDTLKQKAATGTYKSMVFYVE
ACNAGSMFEGLLPEGTNIYAMAASNSTEGSWITYCPGTPDFPPEFDVCLGDLWSITFLEDCDAHNLRTETVHQQFELVKK
KIAYASTVSQYGDIPISKDSLSVYMGTDPANDNRTFVDPLKVIHQHDADLYHIWCKYNMAPEGSSKKIEAQKQLLELMSH
RAHVDNSITLIGKLLFGVNKASKVLNTVRPVGQPLVDDWQCLKAMIRTFETHCGSLSEYGMKHTLSFANMCNAGIQKEQL
AEAAAQACVTFPSNPYSSLAEGFSA

The query sequence (length=425) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6idv:A 425 425 0.9976 0.9976 0.9976 0.0 6idv:B
2 6azt:A 274 272 0.3835 0.5949 0.5993 5.81e-120
3 5obt:B 230 227 0.3553 0.6565 0.6652 3.24e-105 5obt:A
4 7fqi:A 265 268 0.2918 0.4679 0.4627 1.13e-78 4aw9:A, 4awa:A, 4awb:A, 4awb:B, 7fqh:A, 7fqh:B, 7fqh:D, 7fqi:C, 7fqi:B, 7fqj:A, 7fqj:C, 7fqj:B, 7fqk:A, 7fqk:B, 7fqk:C, 7fqk:D, 7fql:A, 7fql:F, 7fql:B, 7fql:H, 7fql:C, 7fql:G, 7fql:D, 7fql:E, 5lu8:A, 5lu9:A, 5lua:B, 5lub:B, 7o50:A, 7o50:B
5 7wld:K 331 246 0.1529 0.1964 0.2642 8.29e-21 8imx:K, 8imy:K, 7w72:K
6 4woh:A 158 92 0.0682 0.1835 0.3152 0.93
7 5ggi:B 551 73 0.0400 0.0309 0.2329 1.5 5ggi:A, 5ggj:A, 5ggj:B, 5ggk:A, 5ggk:B, 5ggl:A, 5ggl:B, 5ggn:A, 5ggn:B, 5ggo:A, 5ggo:B, 5ggp:A, 5ggp:B, 5xfc:A, 5xfc:B
8 4v6w:CX 120 65 0.0541 0.1917 0.3538 2.0 6xu6:CX, 6xu7:CX, 6xu8:CX
9 2oof:A 403 107 0.0565 0.0596 0.2243 4.2 2q09:A
10 4ccz:A 611 39 0.0282 0.0196 0.3077 5.6
11 4n54:A 340 54 0.0353 0.0441 0.2778 6.5 4n54:B, 4n54:C, 4n54:D
12 6b55:G 48 13 0.0235 0.2083 0.7692 7.6 4cqk:A, 4cqk:C, 4cqk:B, 4cqk:D, 4cqk:E, 4cqk:F, 4cqk:G, 4cqk:H, 4cqk:I, 4cqk:J, 4cqk:K, 4cqk:L, 4cqk:M, 4cqk:N, 5kk4:B, 5kk4:C, 5kk4:D, 5kk4:E, 5kk4:F, 5vyp:A, 5vyp:B, 5vyp:C, 5vyp:T, 5vyp:D, 5vyp:E, 5vyp:G, 5vyp:F, 5vyp:H, 5vyp:I, 5vyp:J, 5vyp:K, 5vyp:L, 5vyp:Q, 5vyp:M, 5vyp:N, 5vyp:O, 5vyp:P, 5vyp:R, 5vyp:S, 5vyp:U, 5vyp:V, 5vyp:W, 5vyp:X
13 4cot:A 443 30 0.0353 0.0339 0.5000 8.7 2x8s:A, 2x8s:B
14 6dzi:H 151 40 0.0353 0.0993 0.3750 9.2 6dzp:H, 8fr8:Q, 8kab:H, 5o60:H, 5o61:H, 7s0s:I, 8v9j:H, 8v9k:H, 8v9l:H, 8whx:J, 8why:J, 8wi8:J, 8wib:J, 8wic:J, 7xam:H, 5xym:H, 8xz3:H, 5zeb:H, 5zep:H, 5zet:H
15 7o6z:A 588 114 0.0541 0.0391 0.2018 9.4 7o6z:B
16 8a3v:A 450 62 0.0447 0.0422 0.3065 9.5 8a3v:B, 6t66:A, 6t66:B, 6t66:C, 6t66:D, 6t66:E, 6t66:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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