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BioLiP
>protein
GTLGARRGLEWFLGFYFLSHIPITLLMDLQGVLPRDLYPVELRNLQQWYIEEFKDPLLQTPPAWFKSFLFCELVFQLPFF
PIAAYAFFKGGCKWIRTPAIIYSVHTMTTLIPILSTLLLDDFSKRGQGPKTFQERLFLISVYIPYFLIPLILLLFMVRNP
YYK

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7m95:B 167 167 1.0000 0.9760 0.9760 5.35e-115 7m93:A, 7m93:B, 7m93:C, 7m93:D, 7m94:A, 7m94:B, 7m94:C, 7m94:D, 7m95:A, 7m96:A, 7m96:B, 7m96:C, 7m96:D, 7mfi:A, 7mfi:B, 7mfi:C, 7mfi:D
2 7zvr:A 235 48 0.0982 0.0681 0.3333 0.73
3 3knt:A 207 36 0.0675 0.0531 0.3056 2.9 3knt:C, 3knt:B, 3knt:D
4 6c6r:A 451 58 0.0982 0.0355 0.2759 8.4 6c6n:A, 6c6n:B, 6c6p:A, 6c6p:B, 6c6r:B
5 5ah0:B 387 45 0.0859 0.0362 0.3111 8.7 5ah0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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