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BioLiP
>protein
GTKQEKTILNMARFIRSQALTILEKANELDADEIADIAESIHDHADEIYRSALARF

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1f4n:A 59 56 1.0000 0.9492 1.0000 4.76e-35 1f4m:A, 1f4m:C, 1f4m:E, 1f4n:B
2 1yo7:A 120 55 0.8036 0.3750 0.8182 2.44e-27 1yo7:B
3 1yo7:A 120 29 0.4286 0.2000 0.8276 1.24e-10 1yo7:B
4 8spc:A 370 48 0.3214 0.0486 0.3750 0.52 8spp:A
5 5x51:M 1386 56 0.3571 0.0144 0.3571 0.90 5x4z:A, 5x51:A, 8yfr:A
6 5xon:A 1427 42 0.2857 0.0112 0.3810 1.6 6a5l:A, 6a5o:A, 6a5p:A, 6a5r:A, 6a5t:A, 6a5u:A, 8h0v:A, 8h0w:A, 8he5:A, 6inq:A, 6ir9:A, 6j4w:A, 6j4x:A, 6j4y:A, 6j4z:A, 6j50:A, 6j51:A, 8jh2:A, 8jh3:A, 8jh4:A, 7wbv:A, 7wbw:A, 7wbx:A, 5x4z:M, 5x50:A, 7xn7:A, 5xog:A, 7xse:A, 7xsx:A, 7xsz:A, 7xt7:A, 7xtd:A, 7xti:A, 8yfq:A
7 4kp4:A 219 33 0.2321 0.0594 0.3939 2.3 1bxd:A
8 8yon:C 605 38 0.2500 0.0231 0.3684 4.5 9imj:A, 8ylu:C, 8ylu:D, 8yo1:C, 8yo1:D, 8yo7:D, 8yo7:C, 8yod:C, 8yod:D, 8yon:D
9 6efn:A 383 34 0.2143 0.0313 0.3529 9.1
10 3h0g:M 1476 22 0.1786 0.0068 0.4545 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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