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BioLiP
>protein
GTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVLCGDCNGAGFIGGFLSTFDE

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ekc:B1 73 73 1.0000 1.0000 1.0000 1.12e-47 6ekb:A, 6ekc:B2, 6ekc:B3, 6ekc:B4, 6ekc:B5, 6ekc:B6, 6ekc:B7, 6ekc:B8, 6ekc:D1, 6ekc:D2, 6ekc:D3, 6ekc:D4, 6ekc:D5, 6ekc:D6, 6ekc:D7, 6ekc:D8, 6ekc:F1, 6ekc:F2, 6ekc:F3, 6ekc:F4, 6ekc:F5, 6ekc:F6, 6ekc:F7, 6ekc:F8, 6ekc:H1, 6ekc:H2, 6ekc:H3, 6ekc:H4, 6ekc:H5, 6ekc:H6, 6ekc:H7, 6ekc:H8, 6ekc:J1, 6ekc:J2, 6ekc:J3, 6ekc:J4, 6ekc:J5, 6ekc:J6, 6ekc:J7, 6ekc:J8, 6ekc:L1, 6ekc:L2, 6ekc:L3, 6ekc:L4, 6ekc:L5, 6ekc:L6, 6ekc:L7, 6ekc:L8, 6ekc:N1, 6ekc:N2, 6ekc:N3, 6ekc:N4, 6ekc:N5, 6ekc:N6, 6ekc:N7, 6ekc:N8, 6ekc:P1, 6ekc:P2, 6ekc:P3, 6ekc:P4, 6ekc:P5, 6ekc:P6, 6ekc:P7, 6ekc:P8, 6ekc:R1, 6ekc:R2, 6ekc:R3, 6ekc:R4, 6ekc:R5, 6ekc:R6, 6ekc:R7, 6ekc:R8, 6ekc:T1, 6ekc:T2, 6ekc:T3, 6ekc:T4, 6ekc:T5, 6ekc:T6, 6ekc:T7, 6ekc:T8
2 1uuf:A 339 37 0.1644 0.0354 0.3243 0.053
3 6jzb:A 251 65 0.2603 0.0757 0.2923 0.35
4 8xqw:R 401 19 0.1233 0.0224 0.4737 0.44 8xqx:R
5 8xku:R 267 16 0.0959 0.0262 0.4375 0.65 8xkv:R
6 8xku:R 267 19 0.1096 0.0300 0.4211 5.5 8xkv:R
7 7zhs:A 242 65 0.2466 0.0744 0.2769 1.0 7zhs:C, 7zhs:B, 7zhs:D, 7zhs:E, 7zhs:G, 7zhs:F, 7zhs:H, 7zhs:I, 7zhs:Q, 7zhs:M, 7zhs:U, 7zhs:Y, 7zhs:g, 7zhs:c, 7zhs:k, 7zhs:J, 7zhs:R, 7zhs:N, 7zhs:V, 7zhs:Z, 7zhs:h, 7zhs:d, 7zhs:l, 7zhs:K, 7zhs:S, 7zhs:O, 7zhs:W, 7zhs:a, 7zhs:i, 7zhs:e, 7zhs:m, 7zhs:L, 7zhs:T, 7zhs:P, 7zhs:X, 7zhs:b, 7zhs:j, 7zhs:f, 7zhs:n
8 2dj8:A 60 39 0.1781 0.2167 0.3333 1.1
9 2i6a:A 343 30 0.2055 0.0437 0.5000 2.1 1bx4:A, 2i6a:B, 2i6a:C, 2i6a:D, 2i6b:A, 2i6b:B, 5kb5:A, 5kb6:A, 5kb6:B, 4o1l:A, 4o1l:B
10 7t02:A 1752 20 0.1233 0.0051 0.4500 2.8
11 7r76:A 1834 20 0.1233 0.0049 0.4500 2.8 7r77:A
12 7r78:A 1880 20 0.1233 0.0048 0.4500 2.8
13 8sse:A 507 17 0.1233 0.0178 0.5294 3.0 8sse:B, 8sse:C, 8sse:D, 8sse:E, 8sse:F
14 3ux8:A 564 21 0.1233 0.0160 0.4286 3.9
15 7sh1:A 626 28 0.1918 0.0224 0.5000 6.8 7sh1:B
16 9de2:A 71 29 0.1507 0.1549 0.3793 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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