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BioLiP
>protein
GTFTWTLSDSEGKDTPGGYCLTRWMLIEAELKCFGNTAVAKCNEKHDEEFCDMLRLFDFNKQAIQRLKAPAQMSIQLINK
AVNALINDQLIMKNHLRDIMCIPYCNYSKYWYLNHTTTGRTSLPKCWLVSNGSYLNETHFSDDIEQQADNMITEMLQKEY
MERQG

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ejd:c 165 165 1.0000 1.0000 1.0000 4.29e-126 9ck8:b, 8ejd:a, 8ejd:b, 6p95:a, 6p95:b, 6p95:c, 7sgf:a, 7sgf:b, 7sgf:c, 8tyc:b, 5vk2:b
2 7nxd:B 690 72 0.1333 0.0319 0.3056 3.0 7ceb:B, 7cec:B, 9ckv:B, 7nwl:B, 3vi3:B, 3vi3:D, 3vi4:D, 3vi4:B, 4wjk:B, 4wk0:B, 4wk2:B, 4wk4:B
3 7mu2:C 316 125 0.2061 0.1076 0.2720 3.5 7f69:A, 7mu2:A
4 7zpq:CA 1742 41 0.0788 0.0075 0.3171 4.2 7zrs:CA, 7zuw:CA
5 2jam:B 280 35 0.0788 0.0464 0.3714 5.3 2jam:A
6 8hku:L22P 150 25 0.0485 0.0533 0.3200 7.2 8hkv:L22P, 8hky:L22P, 8hkz:L22P, 8hl1:L22P, 8hl2:L22P, 8hl3:L22P, 8hl4:L22P, 8hl5:L22P
7 2iyk:A 155 19 0.0545 0.0581 0.4737 7.5 2iyk:B
8 5iz4:A 247 76 0.1273 0.0850 0.2763 7.9
9 2wjy:A 773 19 0.0545 0.0116 0.4737 8.6 2gjk:A, 2gk6:A, 2gk6:B, 2gk7:A, 8rxb:E, 8rxb:A, 8rxb:D, 8rxb:I, 8rxb:L, 8rxb:P, 2wjv:A, 2wjv:B, 2xzo:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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