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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fhz:D 166 78 1.0000 0.4699 1.0000 2.00e-50 3cag:A, 3cag:C, 3cag:E, 3cag:B, 3cag:D, 3cag:F, 3ere:D, 3fhz:C, 3fhz:E, 3fhz:B, 3fhz:F, 3fhz:A, 3laj:C, 3laj:E, 3laj:B, 3laj:F, 3laj:A, 3laj:D, 3lap:C, 3lap:E, 3lap:B, 3lap:F, 3lap:A, 3lap:D, 2zfz:A, 2zfz:C, 2zfz:F, 2zfz:B, 2zfz:D, 2zfz:E
2 6wjp:A 80 76 0.5385 0.5250 0.5526 3.27e-26 5jvo:A, 5jvo:B, 6wjo:A, 6wjo:B, 6wjp:B
3 1b4b:A 71 66 0.3205 0.3521 0.3788 9.60e-13 1b4b:C, 1b4b:B
4 2p5m:A 82 61 0.2821 0.2683 0.3607 4.06e-10 2p5m:B, 2p5m:C
5 1xxa:C 73 68 0.2949 0.3151 0.3382 5.23e-05 1xxa:A, 1xxa:B, 1xxa:D, 1xxa:F, 1xxa:E, 1xxb:A, 1xxb:C, 1xxb:B, 1xxb:D, 1xxb:E, 1xxb:F
6 8ps2:G 2036 58 0.2436 0.0093 0.3276 1.6 3hmj:G, 3hmj:H, 3hmj:I, 8prv:G, 8prw:G, 8prw:J, 8prw:I, 8prw:H, 8prw:K, 8prw:L, 8ps1:G, 8ps9:G, 8psa:G, 8psf:G, 8psg:G, 8psj:G, 8psk:G, 8psl:G, 8psm:G, 8psp:G, 6ql5:I, 6ql5:G, 6ql5:H, 6ql5:L, 6ql5:J, 6ql5:K, 6ql6:G, 6ql6:H, 6ql6:I, 6ql6:J, 6ql6:K, 6ql6:L, 6ql9:G, 6ql9:H, 6ql9:I, 6ql9:J, 6ql9:K, 6ql9:L, 6ta1:G, 6ta1:C, 6ta1:E, 6ta1:L, 6ta1:H, 6ta1:J, 6u5t:G, 6u5u:G, 2uv8:G, 2uv8:H, 2uv8:I, 2vkz:G, 2vkz:H, 2vkz:I
7 6zxg:j 116 34 0.1538 0.1034 0.3529 1.9 6zxf:j, 6zxh:j
8 4bwi:A 381 20 0.1282 0.0262 0.5000 1.9 4bwi:B
9 3d80:A 186 18 0.1154 0.0484 0.5000 3.5 3d84:X, 2fzj:A, 3k45:A, 3k47:A, 1u70:A
10 6rin:F 156 21 0.1282 0.0641 0.4762 3.7
11 5sd6:A 187 18 0.1026 0.0428 0.4444 7.3 6a7c:A, 6a7e:A, 1boz:A, 2c2s:A, 2c2s:B, 2c2t:A, 2c2t:B, 6dav:A, 6dav:B, 4ddr:A, 6de4:A, 6de4:B, 2dhf:A, 2dhf:B, 1dlr:A, 1dls:A, 3eig:A, 7ese:A, 3f8y:A, 3f8z:A, 3f91:A, 3fs6:A, 4g95:A, 3ghc:A, 3ghv:A, 3ghw:A, 3gi2:A, 3gyf:A, 1hfp:A, 1hfq:A, 1hfr:A, 5hpb:A, 5hqy:A, 5hqz:A, 5hsr:A, 5hsu:A, 5ht4:A, 5ht5:A, 5hui:A, 5hvb:A, 5hve:A, 4kak:A, 4kak:B, 4kbn:A, 4kbn:B, 4kd7:A, 4kd7:B, 4keb:A, 4keb:B, 4kfj:A, 4kfj:B, 1kms:A, 1kmv:A, 3l3r:A, 4m6j:A, 4m6k:A, 4m6l:A, 1mvs:A, 1mvt:A, 3n0h:A, 3ntz:A, 3nu0:A, 3nxo:A, 3nxr:A, 3nxt:A, 3nxv:A, 3nxx:A, 3nxy:A, 3nzd:A, 3oaf:A, 1ohj:A, 1ohk:A, 1pd8:A, 1pd9:A, 4qhv:A, 4qjc:A, 1s3u:A, 1s3v:A, 1s3w:A, 3s3v:A, 3s7a:A, 5sd7:A, 5sd8:A, 5sd9:A, 5sda:A, 5sdb:A, 5sdb:B, 1u71:A, 1u72:A, 6vcj:A, 6vcj:B, 6vcj:C, 6vcj:D, 2w3a:A, 2w3a:B, 2w3b:A, 2w3b:B, 2w3m:A, 2w3m:B, 8wgn:A, 7xi7:A, 1yho:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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