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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GTDIISLSQAATKIHQAQQTLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSIWD
MVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFP
AQSGVKVATEAEARQWLSELNLPNSSLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQE
ENMKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAK

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3o01:A 283 282 0.9679 0.9576 0.9610 0.0 3o01:B, 3o02:A, 3o02:B
2 3zqe:B 248 199 0.6821 0.7702 0.9598 9.65e-136
3 3zqe:A 272 202 0.6857 0.7059 0.9505 4.53e-134 7agx:2F, 7agx:2K
4 8v5e:A 195 198 0.3357 0.4821 0.4747 2.33e-53 8v5c:B
5 3r9v:B 163 193 0.2571 0.4417 0.3731 2.17e-33
6 4lfl:B 172 56 0.0536 0.0872 0.2679 0.14 4lfl:D, 4lfm:B, 4lfm:D, 4lfn:B, 4lfn:D
7 3hqg:A 222 80 0.0821 0.1036 0.2875 0.94
8 3idu:A 116 74 0.0571 0.1379 0.2162 1.7 3idu:B
9 8ssl:A 1072 58 0.0821 0.0215 0.3966 1.7 5cjt:A, 5cjt:B, 5cju:A, 5cju:B, 5cjv:A, 5cjv:B, 5cjw:A, 5cjw:B, 8ssl:B, 8ssl:C, 4xc6:A, 4xc6:B, 4xc7:A, 4xc8:A, 4xc8:B
10 2o1s:A 536 130 0.1250 0.0653 0.2692 2.7 2o1s:C
11 2o1s:B 493 130 0.1250 0.0710 0.2692 3.2 2o1s:D
12 3l31:A 234 134 0.1286 0.1538 0.2687 4.4 3l2b:A, 3l2b:B, 3l31:B
13 6i8x:A 149 105 0.0821 0.1544 0.2190 6.8 6i8x:B
14 6il9:A 490 48 0.0571 0.0327 0.3333 8.7 6ila:A, 6ilb:A, 6ilb:D
15 8ki7:A 2003 65 0.0786 0.0110 0.3385 8.7
16 7fgx:D 563 34 0.0393 0.0195 0.3235 9.4 7fgw:A, 7fgw:B, 7fgw:C, 7fgw:D, 7fgx:A, 7fgx:B, 7fgx:C, 7fgy:A, 7fgy:B, 7fgy:C, 7fgy:D
17 8ki6:A 1580 65 0.0786 0.0139 0.3385 9.5
18 8ki8:A 1621 65 0.0786 0.0136 0.3385 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218