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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GTAKKNLKATKKFEKKHLKGVLERRNKVKNKAAEMSVDDFFKGGFEILSSFRKLLKMLIKTVVAFWSQTDSTRITAFLVI
RRLVVIGKAVRETVLKASYQGLVQGCRVTNANTLSGINLMKNSAAELWGLDQNLGYTTAFTSIRQLAIHLRNSIINNKNQ
AYRNVYNWQYVHSLDFWSCVLSEHCSSPLRPLIYPLVQVTLGAMRLIPTAIYFPLRFHLIRSLLRLSRATDTYIPLASAL
LEVLQSAEMKKPPKSSTLKPLDFATAYKTPKSYLRTRVYQDGVGEQVVELLSEFFVLWSRNIAFPEFALPTIVALKRWMK
EMRKGNKNAKLGSSLVVLVQKLEMNAKFIEERRAKVDFAPKDRAQVDAFLKDLEWEKTPLGAYVVAQRKLREERKRLMEE
ARREEERKRR

The query sequence (length=410) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i9y:CY 420 420 1.0000 0.9762 0.9762 0.0 8i9x:CY, 8ia0:CY
2 8i9z:CY 382 409 0.8537 0.9162 0.8557 0.0
3 8e5t:6 514 424 0.4512 0.3599 0.4363 1.30e-116
4 8v87:8 477 486 0.4707 0.4046 0.3971 1.54e-113 7nac:8, 7nad:8, 7naf:8, 7r6k:8, 7r72:8, 7r7a:8
5 6hiv:Cv 1059 122 0.0780 0.0302 0.2623 1.3 6hiw:Cv, 6hiy:Cv, 7pub:Cv
6 4ntc:A 325 63 0.0561 0.0708 0.3651 2.5 4ntc:B
7 2ok0:H 216 107 0.0707 0.1343 0.2710 3.0
8 7aor:z 1071 123 0.0732 0.0280 0.2439 4.9
9 4y0k:A 405 95 0.0488 0.0494 0.2105 5.5 4y1b:A
10 2yd1:A 196 87 0.0707 0.1480 0.3333 7.1
11 6hzn:A 743 72 0.0439 0.0242 0.2500 8.4
12 7abg:W 162 118 0.0780 0.1975 0.2712 8.5 7abi:W, 9fmd:o, 8i0p:o, 8i0r:o, 6qdv:W, 6qx9:2A
13 1iru:G 245 96 0.0561 0.0939 0.2396 8.9 1iru:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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