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BioLiP
>protein
GSVQTGIVLCKFGALCSNPSCPFGHPTPANEDAKVIDLMWCDKNLTCDNPECRKAHSSLSKIKEVKPISQK

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3zj2:A 71 71 1.0000 1.0000 1.0000 7.89e-49
2 2vrd:A 61 33 0.2394 0.2787 0.5152 0.085 4pjo:L, 4pjo:l, 4pjo:M, 4pjo:m, 6qx9:1C, 7vpx:N
3 2lhn:A 80 28 0.1690 0.1500 0.4286 0.36 5l2l:A, 5l2l:B, 5l2l:F, 5l2l:E
4 2lhn:A 80 17 0.1268 0.1125 0.5294 9.8 5l2l:A, 5l2l:B, 5l2l:F, 5l2l:E
5 8w2o:B 178 25 0.1831 0.0730 0.5200 1.1
6 5h4r:A 375 26 0.1549 0.0293 0.4231 1.4
7 4lj0:A 65 18 0.1408 0.1538 0.5556 4.5 4lj0:B
8 2d9n:A 77 30 0.1972 0.1818 0.4667 6.3 2rhk:C
9 2xto:A 224 63 0.2535 0.0804 0.2857 6.7 2xtm:A, 2xtm:B, 2xtn:A, 2xto:B
10 1itk:B 714 28 0.1408 0.0140 0.3571 7.5 1itk:A, 3uw8:A, 3uw8:B, 3vlh:A, 3vlh:B, 3vli:A, 3vli:B, 3vlj:A, 3vlj:B, 3vlk:A, 3vlk:B, 3vll:A, 3vll:B
11 8a22:AJ 122 56 0.1831 0.1066 0.2321 8.8 8apn:AJ, 8apo:AJ

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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