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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSVDSTLGLEIIEVVEQAAIASAKWMGKGEKNTADQVAVEAMRERMNKIHMRGRIVIGEGERDDAPMLYIGEEVGICTRE
DAKSFCNPDELVEIDIAVDPCEGTNLVAYGQNGSMAVLAISEKGGLFAAPDFYMKKLAAPPAAKGHVDIDKSATENLKIL
SDCLNRSIEELVVVVMDRPRHKELIQEIRNAGARVRLISDGDVSAAISCAFSGTNIHALMGIGAAPEGVISAAAMRCLGG
HFQGQLIYDPEVVKTGLIGESREGNLERLASMGIKNPDQVYNCEELACGETVLFAACGITPGTLMEGVRFFHGGVRTQSL
VISSQSSTARFVDTVHMKESPKVIQLH

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3rpl:B 349 347 1.0000 0.9943 1.0000 0.0 3roj:A, 3roj:B, 3roj:C, 3roj:D, 3rpl:A, 3rpl:C, 3rpl:D
2 5a5l:A 338 337 0.7896 0.8107 0.8131 0.0
3 6ayu:A 319 329 0.3862 0.4201 0.4073 4.70e-82 6ayu:B, 6ayv:A, 6ayv:B, 7txb:B, 7txb:A
4 8g5w:A 328 337 0.4063 0.4299 0.4184 1.03e-81 8g5w:B, 8g5w:C, 8g5x:A, 8g5x:B, 8g5x:C, 7js3:A, 7js3:B, 7js3:C, 7txa:A, 7txa:B, 7txa:C, 7txa:D, 7txa:Q, 7txa:U, 7txa:W, 7txa:1, 7txg:A, 7txg:B, 7txg:C, 7txg:D
5 3big:A 321 332 0.4006 0.4330 0.4187 2.08e-77 3d1r:A, 2r8t:A
6 7et3:O 69 31 0.0403 0.2029 0.4516 0.58 7etj:O, 7eto:O
7 5nbs:A 842 156 0.1037 0.0428 0.2308 0.69 5nbs:B
8 7etj:N 76 23 0.0346 0.1579 0.5217 2.2 7et3:N, 7eto:N
9 8s91:A 602 53 0.0548 0.0316 0.3585 2.6 7dp3:A, 8s91:B, 8s91:C, 8s94:A, 8s94:C, 8s94:B
10 7qde:B 169 33 0.0403 0.0828 0.4242 4.6 7qdd:B
11 1e94:E 408 87 0.0663 0.0564 0.2644 5.7 1do0:A, 1do0:B, 1do0:D, 1do0:E, 1do2:A, 1do2:C, 1e94:F, 1hqy:E, 1hqy:F, 1ht1:E, 1ht1:F, 1ht1:G, 1ht1:I, 1ht2:E, 1ht2:F, 1ht2:G, 1ht2:H, 6pxk:H, 6pxk:L, 6pxk:B, 6pxl:C, 6pxl:D, 6pxl:H, 6pxl:L, 1yyf:A, 1yyf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218