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BioLiP
>protein
GSSHHHHHHTDPVIAQKAPYPVTVEAGKTYHWCACGRSKAQPFCDGSHKGTGLAPVAYTPDKAGTAYFCGCKASKAPPLC
DGTHKTL

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3tbn:A 87 87 1.0000 1.0000 1.0000 8.92e-60
2 6avj:A 92 76 0.4368 0.4130 0.5000 1.36e-22 6avj:B, 6avj:C
3 6z1p:AV 129 93 0.4023 0.2713 0.3763 1.48e-15
4 8b6h:EF 188 78 0.3218 0.1489 0.3590 8.79e-13 8b6h:Ef, 8bqs:EF, 8bqs:Ef, 8gym:fs, 8gym:FS, 8gzu:0C, 8gzu:47, 8gzu:fs, 8gzu:FS, 7w5z:FS, 7w5z:fs
5 3tbm:A 61 36 0.1839 0.2623 0.4444 0.002 3tbm:B
6 3tbm:A 61 28 0.1379 0.1967 0.4286 0.034 3tbm:B
7 3ew0:A 77 24 0.1379 0.1558 0.5000 0.056 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
8 3ew0:A 77 26 0.1264 0.1429 0.4231 1.1 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
9 3tbo:A 54 38 0.1494 0.2407 0.3421 0.059
10 7yvz:A 63 35 0.1494 0.2063 0.3714 0.30
11 7yvz:A 63 17 0.1034 0.1429 0.5294 6.7
12 3fnv:B 68 17 0.1264 0.1618 0.6471 0.35 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
13 3fnv:B 68 19 0.1149 0.1471 0.5263 6.9 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
14 1gup:A 347 72 0.2299 0.0576 0.2778 0.44 1gup:B, 1gup:C, 1gup:D, 1guq:A, 1guq:B, 1guq:C, 1guq:D, 1hxp:A, 1hxp:B, 1hxq:A, 1hxq:B
15 1mpy:A 307 42 0.1494 0.0423 0.3095 1.6 1mpy:B, 1mpy:C, 1mpy:D
16 6ky3:A 353 14 0.0920 0.0227 0.5714 2.3
17 3ew2:C 124 67 0.1724 0.1210 0.2239 3.0 3ew2:A, 3ew2:B, 3ew2:D, 3ew2:E, 3ew2:F, 3ew2:G
18 1xmz:B 231 39 0.1264 0.0476 0.2821 3.2 1xmz:A
19 3zrj:B 165 9 0.0920 0.0485 0.8889 3.8 3zrj:A
20 4rs2:B 183 22 0.1034 0.0492 0.4091 6.2 4rs2:A
21 7yiv:A 484 21 0.1379 0.0248 0.5714 6.9 7yiv:D, 7yiv:C, 7yiv:B, 7yiv:G, 7yiv:H, 7yiv:F, 7yiv:E, 7yiw:A, 7yiw:D, 7yiw:C, 7yiw:B, 7yiw:G, 7yiw:H, 7yiw:F, 7yiw:E, 7yix:A, 7yix:B
22 7ne7:A 677 28 0.1379 0.0177 0.4286 7.7 7ne4:A, 7ne5:A, 7ob1:A, 7ywp:A
23 7ttj:B 590 29 0.1379 0.0203 0.4138 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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