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BioLiP
>protein
GSSGSSGRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEGHPTSSGPSSG

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1x4v:A 63 63 1.0000 1.0000 1.0000 2.29e-41
2 1wfe:A 86 59 0.3492 0.2558 0.3729 6.44e-08
3 1wys:A 75 75 0.4603 0.3867 0.3867 1.29e-07
4 7y7l:A 45 35 0.2381 0.3333 0.4286 4.58e-07
5 1x4w:A 67 32 0.2540 0.2388 0.5000 6.68e-04
6 1wfh:A 64 44 0.2857 0.2812 0.4091 6.96e-04
7 7yab:A 44 37 0.2222 0.3182 0.3784 8.11e-04
8 1wg2:A 64 39 0.2698 0.2656 0.4359 8.37e-04
9 1wfp:A 74 32 0.2381 0.2027 0.4688 0.002
10 5ij4:A 49 32 0.2063 0.2653 0.4062 0.025
11 2epr:A 48 63 0.4444 0.5833 0.4444 0.064
12 8q7h:A 1403 43 0.2381 0.0107 0.3488 0.10
13 1wfl:A 74 32 0.2222 0.1892 0.4375 0.12
14 2ct7:A 86 86 0.3492 0.2558 0.2558 0.49
15 2yql:A 56 37 0.2381 0.2679 0.4054 0.53
16 1wff:A 85 87 0.4444 0.3294 0.3218 0.96
17 1wjv:A 79 85 0.4444 0.3544 0.3294 4.6
18 6skl:4 679 21 0.1429 0.0133 0.4286 5.0 8kg9:4, 8xgc:4
19 8kg8:4 697 21 0.1429 0.0129 0.4286 5.0 8b9a:4, 8b9b:4, 8b9c:4, 8kg6:4, 8p5e:4, 8p62:4, 8p63:4, 7pmk:4, 7pmn:4, 7qhs:4, 6sko:4, 8w7m:4, 7z13:4, 7z13:c
20 5v8f:4 741 21 0.1429 0.0121 0.4286 5.1 5bk4:C, 5bk4:4, 6eyc:4, 6f0l:C, 3ja8:4, 7p30:4, 7p30:C, 7p5z:C, 7p5z:4, 7pt6:4, 7pt6:D, 7pt7:4, 7pt7:D, 6rqc:4, 7v3u:4, 7v3u:D, 7v3v:4, 7v3v:D, 7w8g:4, 7w8g:D
21 6sc6:A 365 31 0.1270 0.0219 0.2581 5.6 5edv:A, 5edv:B, 6gzy:A, 6gzy:B, 6kc5:B, 6kc6:A, 6kc6:C, 6kc6:E, 6kc6:G, 6kc6:I, 6kc6:K, 4ljo:A, 4ljp:A, 4ljq:B, 4ljq:C, 4ljq:A, 4ljq:D, 6sc5:A, 6sc7:A, 6sc8:A, 6sc9:A, 7v8f:B, 7v8g:D, 7v8g:C
22 4bhd:B 395 27 0.1429 0.0228 0.3333 5.6
23 4uqv:G 429 27 0.1429 0.0210 0.3333 5.6 4uqv:A, 4uqv:B, 4uqv:C, 4uqv:D, 4uqv:E, 4uqv:F, 4uqv:H, 4uqv:I, 4uqv:J, 4uqv:K, 4uqv:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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