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BioLiP
>protein
GSSGSSGMPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVRRKNFVPGKHTFLCSKHFEASCFDLTGQTRRLKM
DAVPTIFDFCTHISGPSSG

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2d8r:A 99 99 1.0000 1.0000 1.0000 9.83e-72
2 2jtg:A 87 81 0.3939 0.4483 0.4815 3.39e-20 2ko0:A, 2l1g:A
3 2lau:A 81 91 0.2727 0.3333 0.2967 4.99e-04
4 1d9v:A 309 53 0.1919 0.0615 0.3585 0.36 3kn7:A, 3kn8:A, 1mrp:A, 1nnf:A, 2o68:A, 3od7:A, 3odb:A
5 9d8a:A 172 46 0.1616 0.0930 0.3478 1.9
6 2jm3:A 91 63 0.1818 0.1978 0.2857 2.0
7 6yxx:E1 473 27 0.1111 0.0233 0.4074 2.1
8 7xh4:A 177 40 0.1212 0.0678 0.3000 2.2 7xh2:A
9 7d1b:A 302 44 0.1616 0.0530 0.3636 2.7
10 6xyc:A 285 32 0.1010 0.0351 0.3125 3.2
11 2yrt:A 75 26 0.1212 0.1600 0.4615 4.7
12 2aep:H 143 48 0.1414 0.0979 0.2917 4.9
13 2cs8:A 108 45 0.1818 0.1667 0.4000 5.0
14 1wem:A 76 41 0.1414 0.1842 0.3415 5.2 4l7x:A, 2m3h:A
15 3k4q:A 438 61 0.1616 0.0365 0.2623 5.6 3k4q:B
16 2dlk:A 79 31 0.1313 0.1646 0.4194 5.6
17 2yrc:A 59 30 0.1111 0.1864 0.3667 6.3 2yrd:A
18 2rsi:A 92 31 0.1111 0.1196 0.3548 6.4 2elt:A, 2ruu:A, 2rv7:A
19 2xf3:B 428 10 0.0808 0.0187 0.8000 9.8 2xf3:A, 2xfs:A, 2xfs:B, 2xh9:A, 2xh9:B
20 2dip:A 98 38 0.1111 0.1122 0.2895 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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