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BioLiP
>protein
GSSGSSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGTCAENFYSGPSSG

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1x4s:A 59 59 1.0000 1.0000 1.0000 3.34e-37
2 2yqq:A 56 60 0.4407 0.4643 0.4333 5.40e-07
3 2n95:A 49 37 0.2373 0.2857 0.3784 0.002
4 2n94:A 48 37 0.2712 0.3333 0.4324 0.007
5 2d8q:A 70 74 0.4576 0.3857 0.3649 0.012 2dan:A
6 5ijl:A 943 26 0.2034 0.0127 0.4615 0.11
7 5ijl:A 943 22 0.1525 0.0095 0.4091 2.1
8 8ppt:B 1191 26 0.2034 0.0101 0.4615 0.11 8ppu:B, 8ppv:B, 6t8h:B
9 8ppt:B 1191 22 0.1525 0.0076 0.4091 2.1 8ppu:B, 8ppv:B, 6t8h:B
10 2e5r:A 63 33 0.2203 0.2063 0.3939 0.23
11 8x1c:L 105 32 0.2542 0.1429 0.4688 0.43
12 7zi4:R 101 23 0.1864 0.1089 0.4783 0.77 6hts:R
13 7ojl:L 1498 17 0.1525 0.0060 0.5294 2.6
14 7ojk:L 1843 17 0.1525 0.0049 0.5294 2.6
15 7ojn:L 2010 17 0.1525 0.0045 0.5294 2.6 5j1n:A, 5j1p:A, 4miw:A, 7oe7:L
16 2e72:A 49 38 0.2881 0.3469 0.4474 3.1
17 2ct7:A 86 59 0.3390 0.2326 0.3390 3.1
18 3o4p:A 314 29 0.2203 0.0414 0.4483 3.6 3byc:A, 1e1a:A, 2gvu:A, 2gvv:A, 2gvw:A, 2gvx:A, 3hlh:A, 3hlh:B, 3hlh:C, 3hlh:D, 3hli:A, 3hli:B, 3hli:C, 3hli:D, 2iao:A, 2iap:A, 2iaq:A, 2iar:A, 2ias:A, 2iat:A, 2iau:A, 2iav:A, 2iaw:A, 2iax:A, 3kgg:A, 3li3:A, 3li4:A, 3li5:A, 1pjx:A
19 2ea5:A 68 68 0.4407 0.3824 0.3824 3.7
20 1wii:A 85 62 0.3559 0.2471 0.3387 3.8 8b3d:M, 8b3f:M
21 7odf:A 703 23 0.1356 0.0114 0.3478 3.8
22 2epp:A 66 19 0.2203 0.1970 0.6842 3.9
23 6hiy:DA 1426 12 0.1186 0.0049 0.5833 4.0
24 7aor:aa 1558 12 0.1186 0.0045 0.5833 4.1
25 6hiv:DA 1557 12 0.1186 0.0045 0.5833 4.1 6hiw:DA, 7pub:DA
26 7ane:aa 1514 12 0.1186 0.0046 0.5833 4.7
27 7ena:2 385 13 0.1356 0.0208 0.6154 5.3 8bvw:4, 8byq:4, 8ebs:E, 8ebt:E, 8ebu:E, 8ebv:E, 8ebw:E, 8ebx:E, 8eby:E, 7egb:2, 7egc:2, 7enc:2, 8gxq:HG, 8gxs:HG, 7lbm:a, 7nvr:6, 7nvw:6, 7nvx:6, 7nvy:6, 7nvz:6, 7nw0:6, 6o9l:6, 6o9m:6, 8wak:2, 8wal:2, 8wan:2, 8wao:2, 8wap:2, 8waq:2, 8war:2, 8was:2, 1z60:A
28 6fxr:A 700 26 0.1695 0.0143 0.3846 5.4 6fxk:A, 6fxm:A, 6fxt:A, 6fxx:A, 6fxy:A, 8one:A, 6te3:A, 6tec:A, 6tes:A, 6teu:A, 6tex:A, 6tez:A, 6wfv:A
29 2jun:A 101 25 0.1695 0.0990 0.4000 6.9 2dq5:A
30 6nmi:E 366 13 0.1356 0.0219 0.6154 7.2
31 7py4:B 327 19 0.1356 0.0245 0.4211 7.7 6k7g:C, 6k7h:C, 6k7i:C, 6k7j:C, 6k7k:C, 6k7l:C, 6k7m:C, 6k7n:C, 6lkn:C
32 5kkl:B 839 28 0.2034 0.0143 0.4286 7.7
33 6ryr:W 708 18 0.1186 0.0099 0.3889 8.1 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
34 2dj8:A 60 64 0.4068 0.4000 0.3750 8.2
35 6x67:C 478 41 0.2034 0.0251 0.2927 8.2 5lme:A, 6x67:D, 6x68:C, 6x68:D
36 2ffw:A 78 32 0.2034 0.1538 0.3750 8.4
37 6fu4:A 297 25 0.1695 0.0337 0.4000 8.6 6fu4:B, 6fu4:C, 6fu4:D
38 2jae:A 478 23 0.1695 0.0209 0.4348 8.7 2jae:B, 2jb1:A, 2jb1:B, 2jb2:A, 2jb2:B, 2jb3:A, 2jb3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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