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BioLiP
>protein
GSSGSSGMEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMAR
NKVAEHLEMCPASVSGPSSG

The query sequence (length=100) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yre:A 100 100 1.0000 1.0000 1.0000 1.95e-69
2 1wjp:A 107 63 0.2000 0.1869 0.3175 0.018
3 2dip:A 98 101 0.3200 0.3265 0.3168 0.22
4 1x5w:A 70 42 0.1300 0.1857 0.3095 2.1
5 2yuc:A 76 72 0.2000 0.2632 0.2778 3.0
6 7o80:Bz 595 34 0.1100 0.0185 0.3235 4.5 7a09:J, 6hcf:k1, 6hcm:k1, 3jag:jj, 3jah:jj, 3jai:jj, 5lzv:jj, 8p03:k, 8p09:k, 8scb:jj, 6yal:k, 6yam:k, 6zme:CI, 6zvj:1
7 2ep4:A 74 73 0.2800 0.3784 0.3836 5.1
8 3k1l:A 376 80 0.2500 0.0665 0.3125 5.3 3k1l:B
9 3cyr:A 107 30 0.1200 0.1121 0.4000 6.3 1gm4:A, 1gmb:A, 2kmy:A, 2ksu:A, 1up9:A, 1upd:A
10 1i77:A 107 33 0.1100 0.1028 0.3333 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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