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BioLiP
>protein
GSSGSSGMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEK

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yrt:A 75 75 1.0000 1.0000 1.0000 8.27e-53
2 2xcm:E 74 63 0.4133 0.4189 0.4921 1.26e-19 2xcm:F
3 2d8r:A 99 26 0.1600 0.1212 0.4615 3.6
4 1dgj:A 906 24 0.1467 0.0121 0.4583 4.4
5 7w93:A 307 17 0.1200 0.0293 0.5294 4.8 7vsk:A, 7vte:A, 7vte:B, 7vte:C, 7vte:D, 7vtf:A, 7vtf:B, 7vtf:C, 7vtf:D, 7vtg:A, 7vtg:B, 7vtg:C, 7vtg:D, 7vva:A, 7vva:B, 7vva:C, 7vva:D
6 5z5a:A 148 20 0.1333 0.0676 0.5000 5.9 5z5a:B, 5z5a:C
7 2eln:A 38 17 0.1467 0.2895 0.6471 8.6 2ruz:A
8 2bht:A 294 72 0.2667 0.0680 0.2778 9.5 2bhs:A, 2bhs:B, 2bhs:C, 2bhs:D, 2bht:B, 2bht:C, 2bht:D, 2jc3:A, 2jc3:H, 2jc3:B, 2jc3:C, 2jc3:D, 2jc3:E, 2jc3:F, 2jc3:G, 2v03:A
9 3sig:A 265 14 0.1200 0.0340 0.6429 9.9 3sii:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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