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BioLiP
>protein
GSSGSSGLPWCCICNEDATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRRPCQEHSGPSSG

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2d8v:A 67 67 1.0000 1.0000 1.0000 1.60e-45
2 2d8q:A 70 74 0.3881 0.3714 0.3514 0.007 2dan:A
3 2yqq:A 56 71 0.4030 0.4821 0.3803 0.065
4 1umv:X 122 52 0.2239 0.1230 0.2885 0.52 1z76:A, 1z76:B, 1zl7:A
5 6jyt:A 597 31 0.1493 0.0168 0.3226 2.6 7cxm:E, 7cxm:F, 7cxn:E, 7cxn:F, 7cyq:F, 7cyq:E, 7egq:E, 7egq:R, 7egq:F, 7egq:S, 7eiz:E, 7eiz:F, 8gw1:E, 8gw1:F, 8gwb:F, 8gwb:E, 8gwe:F, 8gwe:E, 8gwf:F, 8gwf:E, 8gwg:F, 8gwg:E, 8gwi:F, 8gwi:E, 8gwk:E, 8gwk:F, 8gwm:E, 8gwm:F, 8gwn:F, 8gwn:E, 8gwo:F, 8gwo:E, 6jyt:B, 7krn:E, 7kro:E, 7kro:F, 7nio:A, 7nio:E, 7nn0:A, 7nn0:B, 7nn0:C, 7nn0:D, 7nng:B, 7rdx:E, 7rdx:F, 7rdy:E, 7rdy:F, 7rdz:E, 7rdz:F, 7re0:E, 7re0:F, 7re1:E, 7re1:F, 7re2:E, 7re3:E, 7re3:F, 7re3:K, 7re3:L, 5rl6:B, 5rl7:B, 5rl8:B, 5rl9:B, 5rlb:B, 5rlc:B, 5rld:B, 5rle:B, 5rlf:B, 5rlg:B, 5rlh:B, 5rli:B, 5rlj:B, 5rlk:B, 5rll:B, 5rlm:B, 5rln:B, 5rlo:B, 5rlp:B, 5rlq:B, 5rlr:B, 5rls:B, 5rlt:B, 5rlu:B, 5rlv:B, 5rlw:B, 5rly:B, 5rlz:B, 5rm0:B, 5rm1:B, 5rm2:B, 5rm3:B, 5rm4:B, 5rm5:B, 5rm6:B, 5rm7:B, 5rm8:B, 5rm9:B, 5rma:B, 5rmb:B, 5rmc:B, 5rmd:B, 5rme:B, 5rmf:B, 5rmg:B, 5rmh:B, 5rmi:B, 5rmj:B, 5rmk:B, 5rml:B, 5rmm:B, 5rob:B, 6xez:E, 6xez:F, 6zsl:B
6 7mnv:B 38 17 0.1194 0.2105 0.4706 2.8
7 5ydj:B 538 19 0.1493 0.0186 0.5263 3.0 6ary:A, 6ary:B
8 7nng:A 572 25 0.1343 0.0157 0.3600 3.0 5rl6:A, 5rl7:A, 5rl8:A, 5rl9:A, 5rlb:A, 5rlc:A, 5rld:A, 5rle:A, 5rlf:A, 5rlg:A, 5rlh:A, 5rli:A, 5rlj:A, 5rlk:A, 5rll:A, 5rlm:A, 5rln:A, 5rlo:A, 5rlp:A, 5rlq:A, 5rlr:A, 5rls:A, 5rlt:A, 5rlu:A, 5rlv:A, 5rlw:A, 5rly:A, 5rlz:A, 5rm0:A, 5rm1:A, 5rm2:A, 5rm3:A, 5rm4:A, 5rm5:A, 5rm6:A, 5rm7:A, 5rm8:A, 5rm9:A, 5rma:A, 5rmb:A, 5rmc:A, 5rmd:A, 5rme:A, 5rmf:A, 5rmg:A, 5rmh:A, 5rmi:A, 5rmj:A, 5rmk:A, 5rml:A, 5rmm:A, 5rob:A, 6zsl:A
9 2e5r:A 63 46 0.2537 0.2698 0.3696 3.6
10 6k15:H 393 9 0.1045 0.0178 0.7778 3.9 6kw4:H, 6kw5:H, 6v8o:I, 6v92:I
11 6tda:L 596 9 0.1045 0.0117 0.7778 4.0
12 1ijl:A 123 52 0.2388 0.1301 0.3077 4.4 1ijl:B
13 7d3v:B 199 49 0.2388 0.0804 0.3265 6.8 7d3v:A, 7d3w:A, 7d3x:A, 8fii:B, 8fii:A, 8fij:A, 8fij:B, 8fik:A, 8fik:B, 8fil:A, 8fil:B, 8fim:B, 8fim:A, 5keg:A, 2m65:A, 5sww:A, 5sww:B, 5sww:C, 5sww:D, 5td5:A, 4xxo:A, 4xxo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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