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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSSGSSGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESSGPSSG

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2yuc:A 76 76 1.0000 1.0000 1.0000 9.52e-52
2 2d9k:A 75 77 0.3947 0.4000 0.3896 1.81e-05
3 3hcs:A 157 62 0.2368 0.1146 0.2903 1.72e-04 3hcs:B, 3hct:A, 3hcu:A, 3hcu:C, 8hz2:A, 8hz2:B, 2jmd:A, 7l3l:B, 7l3l:D
4 5vo0:D 159 60 0.2632 0.1258 0.3333 0.001 5vnz:A, 5vnz:D, 5vo0:A
5 2d9h:A 78 85 0.4079 0.3974 0.3647 0.019
6 2eod:A 66 25 0.1447 0.1667 0.4400 0.24
7 2eod:A 66 27 0.1184 0.1364 0.3333 6.7
8 1wjv:A 79 86 0.3684 0.3544 0.3256 0.28
9 2yre:A 100 72 0.2632 0.2000 0.2778 2.3
10 7wtb:B 1147 63 0.2763 0.0183 0.3333 2.8 3bg3:A, 3bg3:B, 3bg3:C, 3bg3:D, 3bg9:A, 3bg9:B, 3bg9:C, 3bg9:D, 8j7o:A, 8j7o:B, 8j7o:C, 8j7o:E, 7wta:C, 7wta:B, 7wta:D, 7wta:A, 7wtb:C, 7wtb:A, 7wtb:D, 7wtc:C, 7wtc:A, 7wtc:B, 7wtc:D, 7wtd:C, 7wtd:D, 7wte:C, 7wte:D
11 8hwl:A 941 63 0.2763 0.0223 0.3333 3.3 8hwl:B, 8hwl:C, 8hwl:E
12 8fru:b 57 11 0.1053 0.1404 0.7273 4.5 8br8:Lc, 8brm:Lc, 8bsi:Lc, 8bsj:Lc, 8btd:Lc, 8btr:Lc, 7pwg:b, 7pwo:b2
13 2rpc:A 155 65 0.2895 0.1419 0.3385 5.1 2ej4:A
14 2dq7:X 263 33 0.1447 0.0418 0.3333 7.1
15 1a0r:B 339 25 0.1316 0.0295 0.4000 7.3 7e9h:B, 8jd6:B, 6rmv:A, 7tmw:B, 1xhm:A
16 1x5w:A 70 77 0.3421 0.3714 0.3377 7.7
17 5eku:B 347 18 0.1053 0.0231 0.4444 9.3 5eku:A, 4m37:A, 4m38:A, 4m38:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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