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BioLiP
>protein
GSSGSSGHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVCGREGSGPSSG

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2d9k:A 75 75 1.0000 1.0000 1.0000 1.62e-49
2 2yuc:A 76 77 0.4000 0.3947 0.3896 1.78e-05
3 2yqm:A 89 72 0.3200 0.2697 0.3333 0.59 2yw8:A
4 2epu:A 45 31 0.1867 0.3111 0.4516 1.8
5 5e6m:A 519 29 0.2133 0.0308 0.5517 1.8 4kr2:A, 4kr3:A
6 2yqq:A 56 76 0.3200 0.4286 0.3158 7.4
7 6bza:C 501 26 0.1467 0.0220 0.4231 7.8 6bza:A, 6bza:B, 6bzn:D, 6bzq:A, 6bzq:B, 6bzq:C, 6bzq:D, 6bzt:A, 6bzt:B, 6bzt:C, 6bzt:D, 6bzz:A, 6bzz:B, 6bzz:C, 6bzz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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