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BioLiP
>protein
GSSGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN
KKRHRHSESGPSSG

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yu4:A 94 94 1.0000 1.0000 1.0000 1.74e-66
2 7qcd:C 267 69 0.2021 0.0712 0.2754 1.57e-04 3htk:C
3 7p47:A 187 69 0.2021 0.1016 0.2754 2.02e-04
4 2ct1:A 77 96 0.3298 0.4026 0.3229 0.010
5 8pjn:b 296 49 0.1809 0.0574 0.3469 0.024
6 2ecw:A 85 44 0.1702 0.1882 0.3636 0.11
7 8v83:Z 253 36 0.1383 0.0514 0.3611 0.23 6c0f:v, 8v84:Z
8 8v83:Z 253 29 0.1170 0.0435 0.3793 4.6 6c0f:v, 8v84:Z
9 2dmi:A 115 35 0.1383 0.1130 0.3714 1.1
10 6u75:A 261 80 0.2447 0.0881 0.2875 2.2 6u75:B
11 6wi7:A 206 42 0.1383 0.0631 0.3095 3.2 2ckl:A, 8grm:M, 2h0d:A, 7nd1:H, 8pp7:K, 8pp7:M, 4r8p:K, 4r8p:M, 3rpg:B, 6wi8:A, 6wi8:B
12 7jzv:A 253 43 0.1383 0.0514 0.3023 3.6 8grq:K, 1jm7:A, 7lyb:M
13 4r8p:L 254 39 0.1277 0.0472 0.3077 4.4 2ckl:B, 8grm:N, 2h0d:B, 7nd1:A, 8pp7:L, 8pp7:N, 4r8p:N, 3rpg:C, 4s3o:B, 4s3o:E
14 5f93:B 426 26 0.1170 0.0258 0.4231 4.5 5f7m:A, 5f7m:B, 5f7n:A, 5f7n:B, 5f7w:A, 5f7w:B, 5f7y:A, 5f7y:B, 5f8r:A, 5f8r:B, 5f93:A, 5f93:E, 5f93:G, 5f97:A, 5f97:B, 5f97:C, 5f97:D, 5f9a:A, 5f9d:A
15 6l8n:A 810 49 0.1702 0.0198 0.3265 4.5
16 7ajt:CM 360 45 0.1383 0.0361 0.2889 5.3 7aju:CM, 7d4i:RK, 7d5s:RK, 7d5t:RK, 7d63:RK, 6ke6:RK, 6lqp:RK, 6lqq:RK, 6lqr:RK, 6lqs:RK, 6lqt:RK, 6lqu:RK, 6lqv:RK, 7suk:SH, 5wlc:SH, 6zqa:CM, 6zqb:CM, 6zqc:CM, 6zqd:CM, 6zqe:CM, 6zqg:CM
17 3e3r:A 183 26 0.0957 0.0492 0.3462 6.7 3e3r:B
18 2dlq:A 124 71 0.2021 0.1532 0.2676 6.9
19 6thq:B 301 33 0.1170 0.0365 0.3333 7.4 5ce8:A, 5ce8:B, 5ce8:C, 6thq:A, 6thq:C
20 8cx0:B 176 41 0.1277 0.0682 0.2927 8.9 8cx1:B, 8cx1:G, 8cx2:B, 8cx2:G
21 2elx:A 35 22 0.0851 0.2286 0.3636 9.0 2rv5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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