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BioLiP
>protein
GSSGSSGDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSSG

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1weu:A 91 64 0.9014 0.7033 1.0000 4.24e-45 3c6w:A, 3c6w:C, 2k1j:A, 2m1r:A, 2pnx:A, 2pnx:C, 2vnf:A, 2vnf:C, 1wen:A
2 1wes:A 71 71 0.7606 0.7606 0.7606 2.64e-37 2g6q:A
3 2qic:A 51 51 0.5493 0.7647 0.7647 2.92e-26
4 1x4i:A 70 80 0.6479 0.6571 0.5750 1.08e-25 7zmx:A, 7zmx:B
5 2jmi:A 60 48 0.3803 0.4500 0.5625 3.23e-18 2jmj:A
6 2mum:A 50 48 0.3662 0.5200 0.5417 1.76e-17
7 1wem:A 76 81 0.5211 0.4868 0.4568 4.92e-09 4l7x:A, 2m3h:A
8 1wew:A 78 79 0.4366 0.3974 0.3924 5.99e-09
9 2k16:A 75 39 0.2394 0.2267 0.4359 1.58e-05 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C
10 6j2p:A 98 53 0.2817 0.2041 0.3774 4.40e-05 6j2p:B, 6j2p:D, 6j2p:C
11 4gnd:C 107 34 0.2254 0.1495 0.4706 9.41e-05 4gnd:A, 4gne:A, 4gnf:A, 4gng:A, 4gng:D
12 9c0o:A 63 58 0.2676 0.3016 0.3276 2.84e-04
13 1wee:A 72 75 0.4225 0.4167 0.4000 7.13e-04
14 1wep:A 79 72 0.3803 0.3418 0.3750 0.001
15 2naa:A 94 34 0.1972 0.1489 0.4118 0.001
16 3n9m:A 503 45 0.2535 0.0358 0.4000 0.001 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
17 5b73:A 313 48 0.2394 0.0543 0.3542 0.001 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
18 2yql:A 56 67 0.3521 0.4464 0.3731 0.002
19 6ryr:W 708 39 0.2113 0.0212 0.3846 0.002 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
20 2puy:B 60 41 0.2254 0.2667 0.3902 0.005 2puy:A
21 7mju:A 184 41 0.2394 0.0924 0.4146 0.006 5dag:A, 5dah:B, 5dah:A
22 2miq:A 94 52 0.2817 0.2128 0.3846 0.006
23 1we9:A 64 34 0.2254 0.2500 0.4706 0.014
24 1x4j:A 75 78 0.4085 0.3867 0.3718 0.031
25 3kv4:A 432 60 0.3239 0.0532 0.3833 0.031 4do0:A, 3k3n:A, 3k3o:A, 2wwu:A
26 2l5u:A 61 41 0.2113 0.2459 0.3659 0.054
27 5vab:A 54 39 0.1972 0.2593 0.3590 0.13
28 2ma5:A 61 32 0.1690 0.1967 0.3750 0.16
29 8ge0:A 188 37 0.2113 0.0798 0.4054 0.22 8gdx:A, 8ge0:B, 8ge0:C
30 8f8y:B 433 61 0.2958 0.0485 0.3443 0.29 8f8y:A, 8f8z:A, 8f8z:B, 3kqi:A, 7m10:A, 3pu3:A, 3pu3:B, 3pu8:B, 3pu8:A, 3pua:A, 3pus:A, 3pus:B
31 5wlf:A 60 61 0.3099 0.3667 0.3607 0.36 5wle:A
32 6q3m:C 219 39 0.2113 0.0685 0.3846 0.36 6q3m:A, 6q3m:B
33 6guu:B 204 39 0.2113 0.0735 0.3846 0.48 6guu:A
34 1mm3:A 61 39 0.2113 0.2459 0.3846 0.79
35 6fhq:A 58 18 0.1268 0.1552 0.5000 1.5 6fhq:B, 6fi1:A, 6fi1:B, 4qf3:A, 4qf3:B
36 1tz3:A 299 14 0.1127 0.0268 0.5714 1.7 1tz6:A, 1tz6:B
37 1wev:A 88 29 0.1831 0.1477 0.4483 1.9
38 6u04:A 168 23 0.1408 0.0595 0.4348 2.1 5erc:A
39 1ydn:A 283 36 0.2113 0.0530 0.4167 2.9 1ydn:B, 1ydn:C, 1ydn:D
40 8bpb:C 126 34 0.1972 0.1111 0.4118 4.0 8bpc:C
41 2l43:A 80 26 0.1268 0.1125 0.3462 4.8 2ku3:A
42 6elq:X 630 43 0.1549 0.0175 0.2558 4.8 6elq:A, 6elq:B
43 8bpa:C 213 34 0.1972 0.0657 0.4118 4.9 8c60:C
44 6r1b:B 395 27 0.1690 0.0304 0.4444 4.9 6r1b:A, 6r1b:C, 6r1b:D
45 5uw3:D 698 32 0.1549 0.0158 0.3438 5.2 5uw5:D, 5uw6:D, 5uw7:A, 5uw7:B, 5uzw:D
46 5z8l:A 204 27 0.1549 0.0539 0.4074 5.4 5z8n:A, 5z8n:B, 5z8n:C
47 3o36:A 184 45 0.2254 0.0870 0.3556 6.5 7b9x:A, 5h1t:A, 5h1t:B, 5h1t:C, 5h1t:D, 5h1u:B, 5h1u:A, 5h1u:C, 5h1u:D, 5h1v:A, 5h1v:B, 3o33:A, 3o33:B, 3o33:C, 3o33:D, 3o34:A, 3o35:B, 3o35:A, 3o36:B, 3o37:A, 3o37:B, 3o37:C, 3o37:D, 4yab:A, 4yab:B, 4yad:A, 4yad:B, 4yat:A, 4yat:B, 4yax:A, 4yax:B, 4ybm:A, 4ybm:B, 4ybs:A, 4ybt:A, 4yc9:A, 4zql:A, 4zql:B
48 5fmf:2 174 25 0.1268 0.0517 0.3600 6.8 3po3:S, 1y1v:S
49 4qiw:B 1069 27 0.1408 0.0094 0.3704 7.5 4qiw:J
50 6kf3:B 1114 27 0.1408 0.0090 0.3704 7.5 9bct:B, 9bcu:B, 6kf4:B, 6kf9:B
51 7xga:A 126 63 0.2535 0.1429 0.2857 7.6 6vfo:A
52 5ijl:A 943 31 0.1408 0.0106 0.3226 8.0
53 8ppt:B 1191 31 0.1408 0.0084 0.3226 8.0 8ppu:B, 8ppv:B, 6t8h:B
54 2e6r:A 92 37 0.1831 0.1413 0.3514 9.2
55 7klo:A 59 41 0.1972 0.2373 0.3415 9.5 7klr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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