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BioLiP
>protein
GSSGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2cur:A 69 69 1.0000 1.0000 1.0000 1.29e-46
2 2d8z:A 70 70 0.6377 0.6286 0.6286 2.17e-28
3 2cuq:A 80 80 0.5942 0.5125 0.5125 1.50e-22
4 1x4k:A 72 72 0.4638 0.4444 0.4444 6.62e-15
5 1x61:A 72 52 0.3768 0.3611 0.5000 6.82e-11
6 2ehe:A 82 82 0.4783 0.4024 0.4024 9.29e-11
7 1x63:A 82 82 0.4783 0.4024 0.4024 9.81e-11
8 1wyh:A 72 51 0.3333 0.3194 0.4510 1.56e-10
9 2d8x:A 70 70 0.4058 0.4000 0.4000 2.29e-10
10 1x4l:A 72 50 0.3333 0.3194 0.4600 2.39e-10
11 2cup:A 101 60 0.3768 0.2574 0.4333 2.70e-10
12 2cup:A 101 30 0.1884 0.1287 0.4333 1.3
13 2egq:A 77 77 0.4493 0.4026 0.4026 8.45e-10
14 2cor:A 79 80 0.4203 0.3671 0.3625 1.85e-09
15 2miu:A 98 59 0.3333 0.2347 0.3898 3.72e-09
16 2miu:A 98 34 0.1449 0.1020 0.2941 1.5
17 1x62:A 79 62 0.3478 0.3038 0.3871 9.60e-09
18 1x64:A 89 62 0.3188 0.2472 0.3548 1.52e-07
19 2dlo:A 81 64 0.3333 0.2840 0.3594 1.89e-07
20 2dj7:A 80 80 0.4493 0.3875 0.3875 3.18e-07
21 1x3h:A 80 80 0.3913 0.3375 0.3375 7.99e-07
22 2dar:A 90 63 0.3333 0.2556 0.3651 8.31e-07
23 2xqn:T 125 60 0.3623 0.2000 0.4167 5.08e-06 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
24 2xqn:T 125 53 0.2754 0.1520 0.3585 5.77e-04 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
25 1cxx:A 59 35 0.2174 0.2542 0.4286 5.27e-06 1ibi:A, 1qli:A
26 2o13:A 58 57 0.2899 0.3448 0.3509 1.99e-05
27 1b8t:A 192 65 0.3333 0.1198 0.3538 2.00e-05 1ctl:A
28 1b8t:A 192 57 0.2464 0.0885 0.2982 0.014 1ctl:A
29 6u4m:A 65 54 0.2899 0.3077 0.3704 2.92e-05 6u4n:B
30 6mif:A 79 56 0.2464 0.2152 0.3036 5.40e-05
31 1v6g:A 81 81 0.4203 0.3580 0.3580 8.36e-05
32 7lt9:B 131 56 0.2464 0.1298 0.3036 1.93e-04 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
33 7lt9:B 131 52 0.2174 0.1145 0.2885 0.011 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
34 2d8y:A 91 91 0.4058 0.3077 0.3077 2.77e-04
35 7qb0:A 127 63 0.2609 0.1417 0.2857 0.003
36 7qb0:A 127 51 0.2174 0.1181 0.2941 0.009
37 2cu8:A 76 68 0.3333 0.3026 0.3382 0.006
38 2mbv:A 96 56 0.2609 0.1875 0.3214 0.010
39 6cme:A 154 49 0.2319 0.1039 0.3265 0.016 6cme:B, 3mmk:A, 3mmk:B
40 6cme:A 154 56 0.2609 0.1169 0.3214 0.030 6cme:B, 3mmk:A, 3mmk:B
41 4jcj:C 150 51 0.2319 0.1067 0.3137 0.021 4jcj:A, 4jcj:B
42 4jcj:C 150 38 0.2029 0.0933 0.3684 8.4 4jcj:A, 4jcj:B
43 2dfy:X 158 54 0.2319 0.1013 0.2963 0.026 2dfy:C, 1rut:X
44 1wig:A 73 72 0.3333 0.3151 0.3194 0.027
45 2rgt:B 154 49 0.2464 0.1104 0.3469 0.028 2rgt:A
46 2rgt:B 154 56 0.2609 0.1169 0.3214 0.25 2rgt:A
47 2jtn:A 182 49 0.2464 0.0934 0.3469 0.032
48 2jtn:A 182 56 0.2609 0.0989 0.3214 0.31
49 2lxd:A 123 51 0.2174 0.1220 0.2941 0.038 2l6y:B, 2l6z:C
50 2o10:A 60 35 0.1884 0.2167 0.3714 0.042
51 4kfz:B 148 51 0.2174 0.1014 0.2941 0.073 4kfz:A, 2xjy:A, 2xjz:A, 2xjz:B, 2xjz:C, 2xjz:D, 2xjz:E, 2ypa:C
52 4kfz:B 148 25 0.1594 0.0743 0.4400 6.1 4kfz:A, 2xjy:A, 2xjz:A, 2xjz:B, 2xjz:C, 2xjz:D, 2xjz:E, 2ypa:C
53 1x6e:A 72 65 0.2899 0.2778 0.3077 0.16
54 2co8:A 82 45 0.2319 0.1951 0.3556 0.17
55 1iml:A 76 49 0.2174 0.1974 0.3061 0.21
56 3f6q:B 72 60 0.2609 0.2500 0.3000 0.22 4hi8:B, 4hi9:B
57 1a7i:A 60 35 0.1594 0.1833 0.3143 0.33
58 2lzu:A 72 49 0.2029 0.1944 0.2857 0.43
59 6yxy:BX 133 65 0.2319 0.1203 0.2462 0.53 7aoi:BX, 6hiv:BX, 6hix:BX
60 1g47:A 70 49 0.2174 0.2143 0.3061 0.59 2kbx:B
61 3ixe:B 70 55 0.1884 0.1857 0.2364 0.64
62 7kgn:A 462 24 0.1594 0.0238 0.4583 0.88
63 7kgm:A 512 24 0.1594 0.0215 0.4583 0.88
64 6ntw:A 505 24 0.1594 0.0218 0.4583 0.94
65 1iqc:A 308 18 0.1304 0.0292 0.5000 2.8 1iqc:B, 1iqc:C, 1iqc:D
66 2yqm:A 89 69 0.2899 0.2247 0.2899 3.0 2yw8:A
67 1j2o:A 114 25 0.1594 0.0965 0.4400 3.1
68 6fu3:A 329 18 0.1014 0.0213 0.3889 3.8 6fu3:B, 6qkn:A, 6qkn:B, 7zs8:A, 7zs8:B
69 3bra:A 370 47 0.2174 0.0405 0.3191 4.9 3buf:A, 3bug:A, 3buh:A, 7d5a:A, 4dh6:A, 5dqc:B, 4dus:A, 5enk:A, 5enm:A, 5ie1:A, 3inh:A, 4j1h:A, 4j1k:A, 4ke1:A, 5kqf:A, 5kr8:A, 3kyr:A, 3kyr:B, 3kyr:C, 6nv7:B, 6nw3:C, 5qdc:A, 4rce:A, 3rsv:A, 3rtn:A, 3ru1:A, 3vv6:A, 3vv7:A, 3vv8:A, 3wb4:A, 3wb5:A, 4xkx:A, 2zjh:A, 2zji:A, 2zjk:B, 2zjn:A
70 7aih:Ax 167 31 0.1159 0.0479 0.2581 5.1 7am2:Ax, 7ane:Ax
71 7b9p:A 899 42 0.2029 0.0156 0.3333 5.5
72 7b9q:A 868 42 0.2029 0.0161 0.3333 6.3 7b9q:B
73 2rak:A 382 23 0.1594 0.0288 0.4783 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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